1C9K,1CBU


Conserved Protein Domain Family
CobU

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cd00544: CobU 
Click on image for an interactive view with Cn3D
Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)
CobU is a bacterial bifunctional cobalbumin biosynthesis enzyme which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity and is a key participant in the final stages of cobalamin biosynthesis where it is involved in nucleotide loop assembly. CobU is a homotrimer which functions both as a kinase and as a nucleotidyl transferase. It phosphorylates of adenosylcobinamide to form adenosylcobinamide phosphate (using a variety of nucleotides as the phosphate donor) and then adds GMP to adenosylcobinamide phosphate to form adenosylcobinamide-GDP, specifically using GTP.
Statistics
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PSSM-Id: 410861
Aligned: 68 rows
Threshold Bit Score: 148.836
Created: 7-Mar-2002
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
GTP bindingtrimerputative
Conserved site includes 18 residues -Click on image for an interactive view with Cn3D
Feature 1:GTP binding site [chemical binding site]
Evidence:
  • Structure:1C9K; Salmonella enterica subsp. enterica serovar Typhimurium CobU bound to MgGDP, contacts at 4A
    View structure with Cn3D
  • Comment:contains the Walker A and Walker B motifs

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #######               # ### #                 #  #     #                   
1C9K_C      2 ILVTGGARSGKSRHAEALIgd-aPQVLYIATSQIL-----DDEMAARIQHHKDGRpAHWRTAECwRHLDTLITAdla--- 72  Salmonella typhimu...
EFS86080  381 MLVIGGARSGKSTFAESRLpr-dSRVTYVATSQRNp---gDAEWEERIRLHQARRpATWQTVET-TDIASVLLAdd---- 451 Propionibacterium ...
ADL10899    3 TLVLGGARSGKSAFAEALVg--aGSCRYIATARPYgdgdfDADFQRRISQHVQRRpSHWATEDR-ADLCEVFSPeylrqy 79  Corynebacterium ps...
BAB74873    2 ILITGPARSGKSEWAEIWAresgKTVIYVATATSNp---dDAEWQERIQQHQNRRpQDWITLEVpTTLSMTLADtk---- 74  Nostoc sp. PCC 7120
ACA99552    5 ILVTGAVRSGKSEWAEHLAlqsqRPVTYIATATENp---dDPEWMARIQHHRDRRpKNWGFMGEsVHLTEAMRRip---- 77  Synechococcus sp. ...
NP_681895   5 VLVTGPTRSGKSEWAEALAaqskQPVIYIATAIASp---eDMEWLQRIQQHRARRpAAWELRDCpLELAALVRDlp---- 77  Thermosynechococcu...
CAE07731   11 ILVSGPSRGGKSRWAEHLLsg-sADVTYVATAPDRp---nDQDWQTRLDLHRRRRpSHWRLLESdADLTTALRTip---- 82  Synechococcus sp. ...
NP_875366  11 ILVSGPIKSGKSRWAEKLIfk-eKNVTYIATHEVIy---dNKDWIERIRLHKQRRpSHWQLIET-SDISSSLKSid---- 81  Prochlorococcus ma...
CAE19322   12 IFITGGTKSGKSQFAEYLGkk-iSKITYIALSESRp---eDINWQKKINNHRKRRpKEWGLVET-NNLINTLKNe----- 81  Prochlorococcus ma...
NP_601403   3 TLVLGGARSGKSAFAESLVg--sGPVLYVATARPSg---dDPEFAERIAVHAERRpTSWVLDEE-GDVDKLLASpp---- 72  Corynebacterium
Feature 1            ##  #                                                                    
1C9K_C     73 pdDAILLECITTMVTNLLFALggendpeqwdyaamerAIDDEIQILIAACQrc--paKVVLVTNEVGMGIVPENRLARHF 150 Salmonella typhimu...
EFS86080  452 -dSPVLVDCLGVWITRILDEVgawaaap--gdeawqdDLRRHVDDLTSAIRgt--rrDVIFVSNEVGMGVVPDTPAGRLF 526 Propionibacterium ...
ADL10899   80 teHSLLVDDLGTWLTHLIDIKnawd--------sptgSTNLEAEQLTNLLRgfptnrDVVLVTPEVGMGIIPAQHSGRLF 151 Corynebacterium ps...
BAB74873   75 anSCVLVDSLGTWVANLLEQDe--------------vSWASTVAEFLVTVQlv--aaDMVFVAEETGWGIVPAYPLGRKF 138 Nostoc sp. PCC 7120
ACA99552   78 edHCILVDSLGLWVANHLETEp--------------aPWYQLTTAFLEAIKss--prMLILVAEETGWGLVPTYPLGRLF 141 Synechococcus sp. ...
NP_681895  78 pnHCALVDSLGTWVANCLDQSq--------------dQWQATVAELLASVQac--aaQLILVAEEVGWGVVPASVSGRCF 141 Thermosynechococcu...
CAE07731   83 qqSSVLIDALGGFVACHLDASd--------------qAWNACCEELVEQLAgm--gqTCVVVIEETGWGVVPPTLIGGRF 146 Synechococcus sp. ...
NP_875366  82 kgNSILIDSLGGVVSKYLNYDs--------------vKWNTYSSLIIEKLTkf--egVIVIVAEEIGWGVSPYTESGNIF 145 Prochlorococcus ma...
CAE19322   82 -nGPILIDSIGGFIMESINKNd--------------eEWEKMINSLLDLLVmr--vkTTLIVGEQVGWSLVSEYEIGNKY 144 Prochlorococcus ma...
NP_601403  73 -aMPVLVDDLGTWLTHATDACdgwe--------assaQLEAKMDLLIDAILhfq-geDLVIVSPEVGMGIVPEYKSGRLF 142 Corynebacterium
Feature 1                                
1C9K_C    151 RDIAGRVNQRLAAAADEVWLVVSGIGV 177 Salmonella typhimurium
EFS86080  527 RDELGRLNAAVGEACDEVWMCVAGIPK 553 Propionibacterium acnes HL001PA1
ADL10899  152 RDEIGTLNHMIADVCDQVFLVIAGQPL 178 Corynebacterium pseudotuberculosis C231
BAB74873  139 RDRLGALVRQLGGMCDSVYLVTGGYAL 165 Nostoc sp. PCC 7120
ACA99552  142 RDRLGRLIREVGLVSDQVYLLVGGHAL 168 Synechococcus sp. PCC 7002
NP_681895 142 RDRLGALCQQLSPLMTEVYLVTAGFAL 168 Thermosynechococcus elongatus BP-1
CAE07731  147 RDRLGSLAQSLDRQAHSAWLVLQGRAV 173 Synechococcus sp. WH 8102
NP_875366 146 RDRLSELTEKLDTYAKQSWLVIHGRAI 172 Prochlorococcus marinus subsp. marinus str. CCMP1375
CAE19322  145 IERLGDLQKRITKISLENWLTLNGRAI 171 Prochlorococcus marinus subsp. pastoris str. CCMP1986
NP_601403 143 RDRIGTLNQRVAAICERVVFVVAGLPL 169 Corynebacterium

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