1DFU,1NKW,1PNU,2J01,1FEU


Conserved Protein Domain Family
Ribosomal_L25_TL5_CTC

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cd00495: Ribosomal_L25_TL5_CTC 
Click on image for an interactive view with Cn3D
Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain.
L25 is a single-domain protein, homologous to the N-terminal domain of TL5 and CTC. CTC is a known stress protein, and proteins of this family are believed to have two functions, acting as both ribosomal and stress proteins. In Escherichia coli, cells deleted for L25 were found to be viable; however, these cells grew slowly and had impaired protein synthesis capability. In Bacillus subtilis, CTC is induced under stress conditions and located in the ribosome; it has been proposed that CTC may be necessary for accurate translation under stress conditions. Ribosomal_L25_TL5_CTC is mostly found in bacteria, with a few exceptions such as plants or stramenopiles. Due to its limited taxonomic diversity and the viability of cells deleted for L25, this protein is not believed to be necessary for ribosomal assembly. Eukaryotes contain a protein called L25, which is not homologous to bacterial L25, but rather to bacterial L23.
Statistics
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PSSM-Id: 198379
Aligned: 447 rows
Threshold Bit Score: 41.687
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:5S rRNA interface [nucleic acid binding site]
Evidence:
  • Structure:1DFU_P; Escherichia coli ribosomal protein L25 binds 5S rRNA (1DFU_M and 1DFU_N), defined using 3.5 A contacts
  • Structure:2J01_Z; Thermus thermophilus ribosomal protein L25 binds 5S rRNA (2J01_B), defined using 3.5 A contacts

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #          ### #         ###             #                                
1DFU_P         3 TINAEVRkeq---gkgASRRLRAANKFPAIIYGGk----------EAPLAIELDh-DKVMNMQAKaef---ysEVLTIVV 65  Escherichia coli
CBK23275      43 VIPAFRRekd---gknYSRFLRKNGAIPGVLYGSdgn------ghDERILIAVPa-SEVDRFTKRlnla-lecTLFELDL 111 Blastocystis ho...
CCA21716      38 VLPLHIRtqd---gsrAARKLRKKGYLPGLLYGEgm--------nGDDTKVLVSleKKLFDRLHRklwtsidnQVFKVQV 106 Albugo laibachi...
XP_002996999  32 VLQLVVRege---gsrASRRLRKKGLLPGVLYGEgee------gkDERMLVSLPt-RAFEREHRKlwts-ienQVFHVQV 100 Phytophthora in...
EFN51725      50 TLAAEERglv---gsiASNKLRKAGKTPGIVFSGp---------gGEQHLLAFDs-KALGKLVTKlgrtawacSVFDLQI 116 Chlorella varia...
XP_002178034  53 PMQTYLRdveteegsrACRRLRWKNMIPGTIRGSdpnlgifskqpESEIYVKTPw-AVLQRELDRyhrd-fesRVYDITV 130 Phaeodactylum t...
NP_201487     35 TIQAIPReat---grgVSARDRTIGRIPAVVFPQsl-------ldTDASKRGVSr-KQLLTADKKqik--siiDSVGLPF 101 thale cress
EGG22661      92 QIYCDSRvvv---gkaGSKKLRYNGFVPATITGGg----------LPTQNIAIEw-GRLYGLIKTdsf--yrnRKFILNI 155 Dictyostelium f...
XP_641353     46 HLYCFDRkvk---gkaGAKLVRYNDFVPATITGGg----------LPLKNISIEw-GRINGLISSkkf--ykeRKFLLNI 109 Dictyostelium d...
ABF97598      37 TIQALPReta---gprAAARERRSGRVPAVLLALagagp--gegvAHRKLLTADr-KQLGEILKQspy--flsTPVRLQV 108 Japanese rice
Feature 1                        ## #            # # # 
1DFU_P        66 d-------GKEIKVKAQDVQRHpy---kPKLQHIDFVR 93  Escherichia coli
CBK23275     112 e-------GERILCFPRQLSCHpl---tDKPENLNFLR 139 Blastocystis hominis
CCA21716     107 k------dQPPILAIMRDVQFHpv---tDIPLTVNFIR 135 Albugo laibachii Nc14
XP_002996999 101 g------dHPPVKAYMRDVQLDpv---tDVPLAVNFLR 129 Phytophthora infestans T30-4
EFN51725     117 qg----edGSSRTVRALGRQVHmts-ttDAVENVTFVF 149 Chlorella variabilis
XP_002178034 131 ldgpedteGTTHRVLPQNLQRHpv---nSTIYCANFCR 165 Phaeodactylum tricornutum CCAP 1055/1
NP_201487    102 f------cSTTFQLQIRAGQGSstlvesGRVLPLKVHR 133 thale cress
EGG22661     156 d------gKEQIVVVLAFAKLHal---sERALFLKFVR 184 Dictyostelium fasciculatum
XP_641353    110 d------dKEKIIGKLSHAQLHpi---tERAMFIKFCR 138 Dictyostelium discoideum AX4
ABF97598     109 r------aGERSTAVVHSGTVL------PIKVHRDETT 134 Japanese rice

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