1D8C,1N8I


Conserved Protein Domain Family
malate_synt

?
cd00480: malate_synt 
Click on image for an interactive view with Cn3D
Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Statistics
?
PSSM-Id: 238267
Aligned: 41 rows
Threshold Bit Score: 454.767
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
active site
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1D8C; E.coli malate synthase G with bound Mg and glyoxylate

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                       
1D8C_A       35 FWRNFDEIVHDLAPENRQLLAERDRIQAALDEWhrsnpgp-----------------vkdkaaYKSFLRELgylv-pqpE 96  Escherichia coli
AAL63376     28 VEGLIEELVREFRDEINRVIRARREWLNDKRPVrvkgafphweekfvdadgnvrtfreivqglIDNLLDRDsplrwglnW 107 Pyrobaculum aero...
ZP_00033788  39 FWSGFDALVHELAPKNRALLAERDRLQTELDNWhranpgp-----------------vrdlraYRAFLEGIgyiv-pvpA 100 Burkholderia fun...
BAB51267     35 FWSGFSAIVHDLAPKNRALLKKRDAMQERLDGWyrdnga------------------pvdmevYKSFLKEIgylv-pegP 95  Mesorhizobium lo...
BAD75818     35 FWSDFGALISDLTPRNKELLARRDEIQEKLNEWhkahrg------------------rfdfneYKAFLTDIgyle-pevE 95  Geobacillus kaus...
AAZ25107     35 FWNSVAEVLAEFTPRNQQLLATRANLQAHIDVWhtdpanq-----------------pfnqqrYELFLKEIgylv-tekA 96  Colwellia psychr...
AAZ28560     35 FWQQFSSIIHDLSPENKQLLLKRDALQASINSYhqdnkp-------------------ldfshYKKFLADInylv-pqvD 94  Colwellia psychr...
ZP_01264319  39 FWEGFDQVVHELAPKNKELLKIREDLQKKIDDWhiankgn-----------------einleeYKKFLKEIdylk-evgP 100 Candidatus Pelag...
ZP_00773816  35 FWAGFSNILAQLTPVNDALLAKRDLLQQKIDAYcqshpt-------------------lepasYKTFLQEIgyle-tppA 94  Pseudoalteromona...
ZP_00570583  35 FWAGATEIINDLTPRNRELLARRDELQQAVDDYhrrtpg------------------rpaqsdYAEFLTSIgyll-depA 95  Frankia sp. EAN1pec
Feature 1                                                                                       
1D8C_A       97 RVTVEtt--gIDSEITSQAGPQL-VVPAXNARYALNaanarwgslydalygsdiipqegaxvsgydpqrgeqviawvrrf 173 Escherichia coli
AAL63376    108 NTPVPddlhpLKNPGLEITGPWYpMSRAIHQINADVa------------------------------------------- 144 Pyrobaculum aero...
ZP_00033788 101 SVKATtd--hVDTEIAEQAGPQL-VVPLSNQRYALNaanarwgslydalygtdaipeangaekqkafnpvrgaaviayar 177 Burkholderia fun...
BAB51267     96 AFSVStd--nVDPEIAVVAGPQL-VVPVMNARYALNaanarwgslydalygtdaipetggaekgkgfnpargakviawak 172 Mesorhizobium lo...
BAD75818     96 DFEITtd--nVDDEIAVQAGPQL-VVPLTNARYALNaanarwgslydalygtdaiseedgaergssynpvrgakviaygr 172 Geobacillus kaus...
AAZ25107     97 DFTIStq--nVDDEVALIAGPQL-VVPLMNARFSLNaanarwgslydalygtdvigddngakqtkdfnpirgrrvqayar 173 Colwellia psychr...
AAZ28560     95 DFSINts--nVDNELALMAGPQL-VVPIMNARFALNavnarwgslydalygtdvishengaqpgktynpvrgkkviafak 171 Colwellia psychr...
ZP_01264319 101 DFKIKtn--nVDEEITSIAGPQL-VVPIMNERYALNaanarwmslydslygtdvidqsedsatqrydplrgemvikygrd 177 Candidatus Pelag...
ZP_00773816  95 DFSITtd--nVDDEVATMAGPQL-VVPINNARFALNaanarwgslydaaygtdvipedngatrtkaynpargqqviqyar 171 Pseudoalteromona...
ZP_00570583  96 PFTITtd--gVDDEIATQAGPQL-VVPLLNARYAVNaanarwgslydalygsdvidetdgreraggynptrgaaviarvr 172 Frankia sp. EAN1pec
Feature 1                                                                                       
1D8C_A      174 ldeslplengsyqdvvafkvvdkql--riqlkngkettlrtpaqfvgyrgdaaaptcillknnglhielqidangrigkd 251 Escherichia coli
AAL63376        --------------------------------------------------------------------------------     Pyrobaculum aero...
ZP_00033788 178 rfldqaaplangshadatrygvegg-klvvtlkngtselktpaqfigyqgeesapsavllkhnglhfeiqidandsigkt 256 Burkholderia fun...
BAB51267    173 dfldqsvpltsgkwagvnglsvahg-alklgagaggttladprqfagyrgdaanpdavllvknglhieivvdrnnqigrt 251 Mesorhizobium lo...
BAD75818    173 qfldeavplaqyshkdavqyaivdgqlvvtteggattglkepekfvgfqgdpqhptavllknnglhieiqidrehavgkt 252 Geobacillus kaus...
AAZ25107    174 rfldetlpltrgshidavkyhivkkaftvtlftgeqvqlkeaqqfvgykgstaapsillcrhnglhieiqidkdnvvgkt 253 Colwellia psychr...
AAZ28560    172 gyldqaiplltgnhsqaisyhltehqlmvsladgqqsplkdpsafigftgsinkpdslmfthnglhlnllfsddsaigke 251 Colwellia psychr...
ZP_01264319 178 flekyfplenfewhnitgfkidngs--ltvlkdsnksslknkdkyighrgeandpsaiilknnnlhieiiidpnafsaqq 255 Candidatus Pelag...
ZP_00773816 172 kwldviapltngshttsqgyditsgqlvvtladastatlshptqllgfvgdknnpsaillqhnglhvelqfdrthqigqs 251 Pseudoalteromona...
ZP_00570583 173 eildrsfpltsgshadatryavdad-glvvtvdgaavrladpalfvgfrgegdeptavllthhglhveiqvdrnhpvgag 251 Frankia sp. EAN1pec
Feature 1                                                                                       
1D8C_A      252 dpahindviveaaisTILDCEDSVAavd--------aeDKILLYRNLLGLXQGTLqekxeknGRQIvrklnddrhyt-aa 322 Escherichia coli
AAL63376    145 --------------sMMEDEEDASPawyiprgsgravaAVWEARRVVNRVLRGEVpqpyyegGKEYrikk---------- 200 Pyrobaculum aero...
ZP_00033788 257 dsahvkdvvveaavsTIIDCEDSVAavd--------adDKVQLYRNWLGLMNGDLteevtknGKTFtrrlnadrvytaan 328 Burkholderia fun...
BAB51267    252 dpagiadvilesaltTIQDCEDSVAavd--------aqDKVVVYRNWLGLMKGDLaeeiskaGRSFvrklnadrayt-ap 322 Mesorhizobium lo...
BAD75818    253 dqagvkdivleaavtTIMDGEDSVAavd--------aeDKVLVYRNLFGLVKGDLtatfeknGKIMtrslnpdrvyk-tp 323 Geobacillus kaus...
AAZ25107    254 daaavkdvvlesalsTIQDCEDSIAavd--------asDKTSVYRNWLGLMKGDLaeiiqkgSRTItrtlnhdrnyl-sp 324 Colwellia psychr...
AAZ28560    252 daaglsdvvlesaltTIMDCEDSVAavd--------geDKVIAYRNWLGLMTGKLsaklnknGKTItrtmnndlsvq-tl 322 Colwellia psychr...
ZP_01264319 256 dpakisdiiveaavsTICDNEDSVAavd--------adDKVICYRNWLGLMKGDLkstfeknGKTYerklnpdrsyi-sk 326 Candidatus Pelag...
ZP_00773816 252 dpcgmkdilvesaltTIMDCEDSVAavd--------aeDKTLVYQNWLGLIKGTLevslskpGGSSvrrlsadrnyt-tl 322 Pseudoalteromona...
ZP_00570583 252 dragvsdvvveaavtTIMDLEDSVAavd--------aaDKVLGYRNWLQLMQRRLtaevdkgGRTFtrvlaadreyt-ta 322 Frankia sp. EAN1pec
Feature 1                      #                                                                
1D8C_A      323 dgseislhgRSLLFIRNVGHLXTIPVIwdsegnEIPEGILDGVXTGAIALYdlkvqk---nsrtgSVYIVKPKXhgPQEV 399 Escherichia coli
AAL63376    201 -----prdkWPTLIHRVPGLHILDFDIrvd-gkPAPAIITSIVIYTVNNYDllkr-------agsGVYFYIPKVqtPDEA 267 Pyrobaculum aero...
ZP_00033788 329 gtapvvlhgRSLLFIRNVGHLMTNPAVltkdghEIPEGILDAVITSLCALHdrkhkl---nsrtgSIYIVKPKMhgPAEV 405 Burkholderia fun...
BAB51267    323 aggqitvpgRSLMLVRNVGHLMTNPAIldrdgnEVPEGIMDAALTALIALHdvgpegrransragSMYVVKPKMhgPEEV 402 Mesorhizobium lo...
BAD75818    324 dggelvlpgRSLMFVRNVGHLMTNNAIlhangeEVHEGIMDAVITSLIMKHsligntrylnsrkgSIYIVKPKMhgSAEV 403 Geobacillus kaus...
AAZ25107    325 dqkeitlpgRSLQFIRNVGHLMTTNAIvtakneKVPEGIVDGLITSLISLHdlkgtskfknskqgSIYIVKPKMhgPEEV 404 Colwellia psychr...
AAZ28560    323 tgdtvtlkgRSLMFVRNVGHLMTNNAIidsqgnEVPEGILDAMITSLIALHdlkgnsafsnssegSIYIVKPKMhgPEEV 402 Colwellia psychr...
ZP_01264319 327 dgkglklhgRSLLLVRNVGHLMTNSAItlkdgsEIPEGIMDAFITSAACLHdikkkg---nsrtgSIYIVKPKMhgPDET 403 Candidatus Pelag...
ZP_00773816 323 tgksfslngRSMMFVRNVGHLMTNDAIlfq-gkPIYEGIMDAVITSLIAKHdllgngqyrnskagSIYIVKPKMhgSEEV 401 Pseudoalteromona...
ZP_00570583 323 dggtvtlpgRSMLLIRQVGLLMTTDAVldrdgrPVPEGILDALVTGLGSVHdlrgdtaggnsrtgSAYVVKPKMhgPDEV 402 Frankia sp. EAN1pec
Feature 1                                  #                         # #                        
1D8C_A      400 AFANKLFTRIETXlgxapnTLKXGIXDEerRTSLNLRSCIAQARNRVAFINTGFLDRTGDEXHSvx--eAGPXLrknqxk 477 Escherichia coli
AAL63376    268 LVIEKILRRVEDRlglkrgELKIAMLYEeaRAGLYLPVIFWIWRERLVKSNNGRWDYLGSLIEMwkdeaVYPDPqnit-m 346 Pyrobaculum aero...
ZP_00033788 406 AFASELFARVEDLlklprnTIKMGIMDEerRTSVNLLACINEARERVAFINTGFLDRTGDEMHTam--eAGPMLrkgdmk 483 Burkholderia fun...
BAB51267    403 AFAVEIFDRVEALlgmprnTIKMGIMDEerRTTVNLKEAIRAARERVVFINTGFLDRTGDEIHTsm--eAGPMIrkgdmk 480 Mesorhizobium lo...
BAD75818    404 AFANELFDRVEDMlglernTIKIGVMDEerRTSLNLKNCIYQVRDRIIFINTGFLDRTGDEIHTsm--eAGPMLrknemk 481 Geobacillus kaus...
AAZ25107    405 AFSHDLFSAIERHlglaqnTIKMGIMDEerRTSANLKECIRAAQTRLAFINTGFLDRTGDEIHTsm--hAGAMAqkalmk 482 Colwellia psychr...
AAZ28560    403 AFANTLFSRVETAlslpqnTVKMGIMDEerRTSVNLKNCIFAAKDRVVFINTGFLDRTGDEIHTsm--mAGPMArkadik 480 Colwellia psychr...
ZP_01264319 404 SFTDLIFTKVEEVlglekyTCKIGIMDEerRTSSNLKECIRTLQNRVFFINTGFLDRTGDEMHTsm--eAGPMIkkgdmk 481 Candidatus Pelag...
ZP_00773816 402 AFADTLFSQVEDAlalpknTLKMGIMDEerRTSVNLKACINAAKARAVFINTGFLDRTGDEIHTsm--hLGPFAlkadik 479 Pseudoalteromona...
ZP_00570583 403 AFTVELMSRVERLlqlppaTIKLGIMDEerRTSVNLRRCVYEARDRVVFINTGFLDRTGDEIHTsm--lAGPMVrkaamr 480 Frankia sp. EAN1pec
Feature 1                                                                                       
1D8C_A      478 stpWIKAYERNNVLSGLFCGl------------rGKAQIG--KGXWAXPd-----LXADXYSQKGDQLRAGA-------- 530 Escherichia coli
AAL63376    347 thpIMMAYQKWNALLCLMAGldrggrlnaapvggMAAVMLyrPDDPYQRnrfnarALRAIWLDKLRERLIGLiflteepv 426 Pyrobaculum aero...
ZP_00033788 484 ssaWIAAYERSNVLVGLSAGl------------rGRSQIG--KGMWAMPd-----LMHAMLEQKIAHPKAGA-------- 536 Burkholderia fun...
BAB51267    481 qaaWISAYEAWNVDTGLECGl------------aGHAQIG--KGMWAMPd-----LMAAMLEQKIAHPKAGA-------- 533 Mesorhizobium lo...
BAD75818    482 sstWLQAYEKSNVAVGLAAGf------------rGRAQIG--KGMWAMPd-----LMAEMLKQKGAQLKAGA-------- 534 Geobacillus kaus...
AAZ25107    483 depWITAYENRNVRIGLQAGl------------qGKAQIG--KGMWAIPd-----QMSEMVKSKIAHPKSGA-------- 535 Colwellia psychr...
AAZ28560    481 ltpWIGAYEDNNVDVGLACGf------------sQKAQIG--KGMWPIPd-----QMANMIATKINHVEAGA-------- 533 Colwellia psychr...
ZP_01264319 482 sskWIGAYENNNVDIGLQCGl------------sGKAQIG--KGMWAMPd-----KMKEMMEQKTGHLNAGA-------- 534 Candidatus Pelag...
ZP_00773816 480 qqpWLTAYELANVKIGVDAGm------------sGKAQIG--KGMWPIPd-----NMADMMQSKTNHPQSGA-------- 532 Pseudoalteromona...
ZP_00570583 481 eatWIRVYEDNNVDAGLALGf------------pGRAQIG--KGMWAAPd-----NLADMMTQKIGHPLAGA-------- 533 Frankia sp. EAN1pec
Feature 1                                                                                       
1D8C_A      531 ---------------------NTAWVP-----------SPTAATLHALHYhqt--------------------nvqSVQA 558 Escherichia coli
AAL63376    427 rkvtlndilkgrvkgrlfdlfRQSWVAtpeesyvkagnEPLRASLEELQQlinrpvkfvevdgvkipavdsglteqERQL 506 Pyrobaculum aero...
ZP_00033788 537 ---------------------NTAWVP-----------SPTAATLHALHYhqv--------------------dvqAVQQ 564 Burkholderia fun...
BAB51267    534 ---------------------NTAWVP-----------SPTAATLHATHYhkv--------------------dvhAVQA 561 Mesorhizobium lo...
BAD75818    535 ---------------------NTAWVP-----------SPTAATLHALHYhqv--------------------nvsAVQS 562 Geobacillus kaus...
AAZ25107    536 ---------------------NCAWVP-----------SPTAATLHVMHYhkv--------------------nvqEIQS 563 Colwellia psychr...
AAZ28560    534 ---------------------NTAWVP-----------SPTAATLHSLHYhrv--------------------nvfELQK 561 Colwellia psychr...
ZP_01264319 535 ---------------------NCAWVP-----------SPTAAALHALHYhei--------------------nifEKQK 562 Candidatus Pelag...
ZP_00773816 533 ---------------------NTAWVP-----------SPTAATLHALHYhqi--------------------dvfSLRN 560 Pseudoalteromona...
ZP_00570583 534 ---------------------SCAWVP-----------SPTAAALHALHYhev--------------------svaDRQR 561 Frankia sp. EAN1pec
Feature 1                                                                                       
1D8C_A      559 NIaqtefn----aefeplLDDLLtipvaen----------------anwsaqeIQQELDNNVQGILGYVVRWVeqgiGCS 618 Escherichia coli
AAL63376    507 FIklglidedgnitpwviRPDMLdtpekllnnpelwggkdlwsalfeppkgdiTAEHIQHAFYMAANYGFQLLn---GNL 583 Pyrobaculum aero...
ZP_00033788 565 ELertdya----kvrdelLDGLLtipvvae----------------akwsddeIRSEIDNNAQGILGYVVRWIdqgvGCS 624 Burkholderia fun...
BAB51267    562 ALksrp---------kakLDDILsvpvavr----------------pnwtpdeIQRELDNNAQGILGYVVRWIdqgvGCS 616 Mesorhizobium lo...
BAD75818    563 ELandr---------ndyRDDMLqipvvdh----------------pqwtaeeIQEELDNNCQSILGYVVRWIdqgiGCS 617 Geobacillus kaus...
AAZ25107    564 AMqaefsl----pgtiddLSELLtipllknq---------------telstaaIQKELDNNIQGLLGYVVRWVnqgiGCS 624 Colwellia psychr...
AAZ28560    562 QLakrq---------panIDDILtiplaeh----------------tnwteqeISDELDNNCQGILGYVVRWIddgvGCS 616 Colwellia psychr...
ZP_01264319 563 EIqkre---------sakLDDLLtipvadr----------------pnwsmeeINSEISNSAQTLLGYVVRWIdhgvGCS 617 Candidatus Pelag...
ZP_00773816 561 PIasnd---------fdgLDDILtvplladc---------------sslsqqdIQHELDNNVQGILGYVVRWVhqgiGCS 616 Pseudoalteromona...
ZP_00570583 562 ELagrr---------padRLELLtvplaepa---------------aawspeeVAAEVDNNVQGVLGYVVRWVelgiGCS 617 Frankia sp. EAN1pec
Feature 1                      #                                                                
1D8C_A      619 KVPDihn---vaLXEDRATLRISSQHIANWLrhgil-------------------------tkeqvQASLENXAKVVDQQ 670 Escherichia coli
AAL63376    584 AAAIddyelgqrFMNDLATYRIFSTWLWTLLrhkavitkdgafkgpartslgvipaedrvkipagtPFTEELFDKLWDLH 663 Pyrobaculum aero...
ZP_00033788 625 KVPDihn---vgLMEDRATLRISSQHIANWLyhgvv-------------------------krelvEETFRRMARVVDEQ 676 Burkholderia fun...
BAB51267    617 KVPDind---vgLMEDRATLRISSQHIANWLrhkvc-------------------------seiqvRDSLQRMAAIVDRQ 668 Mesorhizobium lo...
BAD75818    618 KVPDihn---vgLMEDRATLRISSQILANWLhhgic-------------------------tkeqvLETLKRMAKVVDEQ 669 Geobacillus kaus...
AAZ25107    625 KVPDidn---iaRMEDRATLRISSQHVCNWLhhgvi-------------------------sdsqvLESLQRMAEVVDQQ 676 Colwellia psychr...
AAZ28560    617 KVPDinn---vgLMEDRATLRISSQHIANWLthnic-------------------------tieqvQASLEKMANIVDKQ 668 Colwellia psychr...
ZP_01264319 618 KVPDinn---vgLMEDRATLRISSQHIANWIhhdic-------------------------tksqvMEVMKKMAKIVDDQ 669 Candidatus Pelag...
ZP_00773816 617 KVPDinn---vgLMEDRATLRISSQHIANWLlhgli-------------------------neaqiNDSMLRMAQLVDAQ 668 Pseudoalteromona...
ZP_00570583 618 KVPDltg---tpLMEDRATCRISSQHVANWLrhgiv-------------------------sreqvEESLRRMAALVDAQ 669 Frankia sp. EAN1pec
Feature 1                                                                                       
1D8C_A      671 nagdpayrpx--------agnfanscaFKAASDLIFLGvk--------------------------qpNGYTEPLLHAWR 716 Escherichia coli
AAL63376    664 mewtla---------------fyddldIIAAERILTRFtdrvkraiaeayragpfryqspretakkiaEVITEEELEKAV 728 Pyrobaculum aero...
ZP_00033788 677 nagdplykp---------mapgfdtiaFKAAQALVFEGrq--------------------------qpSGYTEPLLHKFR 721 Burkholderia fun...
BAB51267    669 nvgdplyrpm--------apdfdksiaFQAACDLVFKGts--------------------------qpNGYTEPVLHARR 714 Mesorhizobium lo...
BAD75818    670 nagdpnyrpm--------apnyddsvaFQAACDLIFRGye--------------------------qpNGYTEPILHRRR 715 Geobacillus kaus...
AAZ25107    677 naadssyiai--------gtdfgesiaFKAAKDLIFQGke--------------------------qpSGYTEPLLHQRR 722 Colwellia psychr...
AAZ28560    669 nasdssyqam--------sndftnsiaFKAAAALIFSGve--------------------------qpNGYTEPLLHQYR 714 Colwellia psychr...
ZP_01264319 670 nkndgaytrsgrgsyemmsenfdqsiaFKTACDLIFKGke--------------------------qpSGYTEPLLHLNR 723 Candidatus Pelag...
ZP_00773816 669 nssdkeyipm--------mpdpiksiaFQAAQELILQGtq--------------------------qpNGYTEPVLHAKR 714 Pseudoalteromona...
ZP_00570583 670 nagepgyrp---------mapafeelaFAAARALLLEGad--------------------------qpNGYTEPLLHEHR 714 Frankia sp. EAN1pec

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap