1FJG,3BBN,1P6G,1VMB,2J5A


Conserved Protein Domain Family
bS6

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cd00473: bS6 
Click on image for an interactive view with Cn3D
Bacterial ribosomal protein S6
bS6 is one of the components of the small subunit of the prokaryotic ribosome, a ribonucleoprotein organelle that decodes the genetic information in messenger RNA and forms peptide bonds to synthesize the corresponding polypeptides. Ribosomes consist of a large and a small subunit, which assemble during the initiation stage of protein synthesis. Prokaryotic ribosomes consist of three molecules of RNA and more than 50 proteins. The small subunits of bacterial and eukaryotic ribosomes have the same overall shapes (with structural elements described as head, body, platform, beak and shoulder). The bacterial ribosomal protein S6 is important for the assembly of the central domain of the small subunit via heterodimerization with ribosomal protein S18.
Statistics
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PSSM-Id: 275385
Aligned: 511 rows
Threshold Bit Score: 54.7637
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
rRNA bindingS18 interface
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:rRNA binding site [nucleic acid binding site]
Evidence:
  • Structure:1FJG: Thermus thermophilus S6 ribosomal protein interacts with 16S rRNA, contacts at 4.5 A.
  • Comment:The 16S ribosomal RNA and its associated proteins form a part of the functionally relevant body of the 30S ribosomal subunit

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #                                             #   #               #  ##      # 
1FJG_F         3 RYEVNIVLNPnldqSQLALEKEIIQRALENygaRVEKVEELGLRRLAYPIAK-DPQGYFLWYQVEMPEDRVNDLARELRI 81  Thermus thermop...
WP_009958576   4 KYEAMIVLDMkgkeENVETLVSQLGREFEQngaKLEQVDNLGKKKFPYAPRH-VESGYYINFHFEAAPEAINGLQTKLKL 82  Verrucomicrobiu...
WP_022478596   5 KYKSTFILDTrgytEPVETLIERLKSVIESvgcKVSGVENLGQKTFARTVDRtFPAGLYVQFSYEGPSSSNAQIKEKLRL 84  Coraliomargarit...
WP_007414532   3 RYEGLFILNTagkeESLKETIDQLSDEINAaggRVETVQKMDKRNFARVADKrNSSGFYVNVIFECKPSAITQLQTRFAL 82  Pedosphaera par...
WP_020152988   4 NYLATIVFDPkgsdGSTDEMIPKLSEIIVSvdgEVQKVESQGTHDFAYPQKGkANAGVYLQFELTGDPEMPTRLKEKLRL 83  Verrucomicrobia...
AHF92124       7 NYRATFILDNrgteDTIEKLIEGVKTEIAAvegQVTAIEDLGLKDFIRVTNPkLVSGHYVQVSFTSPASAPAALKERLRL 86  Opitutaceae bac...
WP_022396138   3 NYEALIVFNMkgteTPVEELINTVAATMKEegaDITATENTGRREFAYESNH-LSAGQYVTYTFSAEPSAIKTIRERLRL 81  Akkermansia sp....
WP_008099109   7 NYKATFILDTrgreESVDDLVEGLKAELASvgaEVTAVENIGRQDFVRTPDVkYTAGVYVQYDFTGSPETPAAVLEKLRL 86  Verrucomicrobia...
WP_018003110   3 QYEGLFILDTvgttEGVDDIIKSISGLIDQaggKMTSEQKLDRRGFARIADKkNSGGFYVGLIFDMEPDALIGFKSALAK 82  Verrucomicrobia...
WP_018970258   4 KYEGLVVLDTkgkeGSVDEFVSEVGKVIEAngaTLDEVKQLGRKTFAYNARQ-IEGGVYVNYFFNAGPEAIEDIKEALDL 82  Rubritalea marina
Feature 1             #  ### 
1FJG_F        82 rdNVRRVMVVKS 93  Thermus thermophilus
WP_009958576  83 neNIYQQYFQRR 94  Verrucomicrobium spinosum
WP_022478596  85 dkTVNRILVIAE 96  Coraliomargarita sp. CAG:312
WP_007414532  83 naDVYRVMFSSA 94  Pedosphaera parvula
WP_020152988  84 ekKVDRVLVERK 95  Verrucomicrobia bacterium SCGC AAA300-N18
AHF92124      87 nrSVYRTFIENN 98  Opitutaceae bacterium TAV5
WP_022396138  82 n-PQIHLQYYKV 92  Akkermansia sp. CAG:344
WP_008099109  87 n-KLVSHKMIQK 97  Verrucomicrobiae bacterium DG1235
WP_018003110  83 rmDVFREQITLA 94  Verrucomicrobia bacterium SCGC AB-629-E09
WP_018970258  83 veGIYLQQYRRL 94  Rubritalea marina

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