1URO,1XPG,1XPG


Conserved Protein Domain Family
URO-D_CIMS_like

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cd00465: URO-D_CIMS_like 
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The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Statistics
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PSSM-Id: 238261
Aligned: 6 rows
Threshold Bit Score: 258.968
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1URO_A       32 PVWCMrqagrylpefretr-------aaqdffstcrspeACCELTLQplrrfPLDAAIIf-----sDILVVPQalgmev- 98  human
1XPG_B      437 PTTTIgsfpqtpevrkxrsky--rkgeiskeeyeafikeQIKKAIELqe-eiGLDVLVHgefertdXVEFFAEklngiat 513 Thermotoga maritima
1XPG_A       34 KAYAFgfpkigekrefkkaledfwkgkiteeqfeeexnkLRXYXVENyr--kNVDVIPSnelsyydFVLDTAVxvgavpe 111 Thermotoga maritima
ZP_00558881  28 PVLGTygtwsayyagyt----------dsetnwdtdkcgKAMLKVAGd---iPMDMTHQvf----nRPGSVYQalgska- 89  Desulfitobacteri...
EAM95508     21 VKQYEfmnlimeasvtma---------gfpapgqtskaaWGITWMWPe---gQIGPFPVh-----dEEHKVLKditew-- 81  Desulfitobacteri...
ZP_00563417  24 PAICVtqtgtveqmeac----------gifwpeanydakMLAGLAAAghteiGFEAIRVp-----fDITAEAEffgcgik 88  Methanococcoides...
1URO_A       99 -------------------------tmvpgkGPSFpeplreeqdlerl---rdpevvaselgyVFQAITLTRqrla--gr 148 human
1XPG_B      514 tqn-------------------gwvlsygsrCYRPpiiygtv---------------trpepxTLKEITYAQslt----e 555 Thermotoga maritima
1XPG_A      112 rfgeyrglstyfdxarggkalextkffntnyHYLVpeietee--------------fyllenkPLEDYLFFKskg----- 172 Thermotoga maritima
ZP_00558881  90 -------------------------fhylseSNIVqysdqsanimkede-yrefsgdpfrffvDKILPRKYRelaqdspv 143 Desulfitobacteri...
EAM95508     82 --------------------------rkyvqAPVIptdde-------------------twapAIAHAQAVDrne----e 112 Desulfitobacteri...
ZP_00563417  89 -------------------------dgtkvqQPSVinhvvnslddlkpfegydindsskristILESIKIVAdeyg--ae 141 Methanococcoides...
1URO_A      149 vpLIGFAGApWTLMTYMVEgggsstmaqa-----------krwlyqrpqaSHQLLRILTDALVPYLVGQvva-gaqALQL 216 human
1XPG_B      556 kpVKGXLTGpVTIXSWSYYred--------------------------ipEREIAYQIALAINEEVKDLeea-gikIVQI 608 Thermotoga maritima
1XPG_A      173 ieTAPWVIGpFTFLYLSKRngewi---------------------rrpnqXEKLLESLVSVYKEVFEKLven-gckEILV 230 Thermotoga maritima
ZP_00558881 144 rdLALTKGA-MQFGMYGGKkgaikaalaqqckmpllfdgvilhpldwiadFFRGIKGVFMDIRRRPEELaea--veALTP 220 Desulfitobacteri...
EAM95508    113 fvTMMAAPGvFEMTHHLMSmedalma-----------------lyeepeaMHELIDYLTEFELAYAKTViekihpdALFH 175 Desulfitobacteri...
ZP_00563417 142 lpIIGSMIGpFSLAQHLTGdswfmdi------------------mtkeeyGLAIMEFTTEFGIAYANAQidn-gadTLSI 202 Methanococcoides...
1URO_A      217 FESHAghl------------------------gpqLFNKFALPyirdvakqvkarlreaglapvPMIIFAKdg----hfA 268 human
1XPG_B      609 DEPAFrekapi------------------kkskwpEYFEWAINafnlaa---------narpetQIHAHXCysd--fneI 659 Thermotoga maritima
1XPG_A      231 NEPAFvcd------------------------lekAHWDLILNvyre-------------lsefPLTVFTYyds---vsD 270 Thermotoga maritima
ZP_00558881 221 LVMRFgmgqvhmapprpnpkvlmmplhlptmlntkDFNKYYWPsfkkvme-------ffaahdiYVIPFYEgdwsryydH 293 Desulfitobacteri...
EAM95508    176 HDDWGsqins--------------------flspeMFKKFFLPaykkiygf------ykangveLIVHHSDsya---anL 226 Desulfitobacteri...
ZP_00563417 203 IDPTAsysl----------------------iggeFYKKFVVPfhaklve-------amharnvPVVLHVCgdt---tdG 250 Methanococcoides...
1URO_A      269 LEELAQagyEVVGLDWtv---aPKKAREcvg--ktvTLQGNLDPc-ALYAse---eeIGQLVKQMLDDFgp----hrYIA 335 human
1XPG_B      660 IEYIHQlefDVISIEAsrskgeIISAFEnfkg-wikQIGVGVWDi-HSPAv-----pSINEXREIVERVlrvlpkelIWI 732 Thermotoga maritima
1XPG_A      271 YEACVSlpvKRLHFDFvsn-eeNLKNLEkhgfpedkKLVAGVINg-RQPWk-----vDLRKVASLVEKLg------aSAI 337 Thermotoga maritima
ZP_00558881 294 LQELPAk-kTMGWFEHg----ePKELKQklg--ntlCLIGLFPTtlLQYGtk---eeCIAKAKELVDALapg---ggYIF 360 Desulfitobacteri...
EAM95508    227 VPFMIEmgvDIWQGVMtt--nnTPELIEkyg--ekiTFMGDIDSg-YLDLpdwqperCAEAVERACRRCgk-----hYFI 296 Desulfitobacteri...
ZP_00563417 251 LAIMESagvDAISVDQnv---nAATAVSkve---kaLIVGNLDPvnCLWNtsv--etVTAESERVLKELdg-----kGLL 317 Methanococcoides...
1URO_A      336 NLGHGLYPDMdp-------------------eHVGAFVDAVHK 359 human
1XPG_B      733 NPDCGLKTRNwde----------------vipSLRNXVALAKE 759 Thermotoga maritima
1XPG_A      338 SNSCPLFHLPvtlelennlpgglkeklafakeKLEELKXLKDF 380 Thermotoga maritima
ZP_00558881 361 GTDKEVISPKdak-----------------aeNIIAINKFVME 386 Desulfitobacterium hafniense DCB-2
EAM95508    297 PCLTMGGPDSiy------------------pgVYAQVNQEIDR 321 Desulfitobacterium hafniense DCB-2
ZP_00563417 318 APGCGIVSQTps-------------------aHLRAMVEVAKS 341 Methanococcoides burtonii DSM 6242
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