1EUA,1MXS,1VHC


Conserved Protein Domain Family
KDPG_aldolase

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cd00452: KDPG_aldolase 
Click on image for an interactive view with Cn3D
KDPG and KHG aldolase
KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Statistics
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PSSM-Id: 188632
Aligned: 78 rows
Threshold Bit Score: 85.2625
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:the enzyme catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate.
  • Structure:1EUA_A binds pyruvate; contacts defined at 3.5A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #                                #   #                        #         
1EUA_A       12 LTTGPVVPVIVvkk--------lehAVPMAKALVAGGVRVLEVTLRTEc-AVDAIRAIAKEvpeAIVGAGTVLnPQQLAE 82  Escherichia coli
NP_442562     2 LRQHRAIAVIRtds--------idlSLQLAKVAIEAGMGLVEITWNSDq-PGETIAHLRHQfphCAIGTGTVLsQEDLLQ 72  Synechocystis sp...
NP_488811    10 LQKQRAIAVIRapq--------ielGLQMALAVASGGMQLIEITWSSDr-PGELIAQLREQlpeCTIGTGTLFnLQQLEE 80  Nostoc sp. PCC 7120
NP_682718    10 LQGLPLIAVVRaat--------ptaAIARAQVYLQAGFTSLEVTWTIPd-APSVLQQLRQDyphCTIGAASLQnPQMLKE 80  Thermosynechococ...
NP_874648    24 LTYQPLLIVLRiteddld-nleiksFLTLIKTLQSLGVRNIEIAWSSHknWIKFIQEIKKEfkeISFGAASITnSNSLEL 102 Prochlorococcus ...
NP_892345    22 LLIKPTKNIYTntie-------kdlVELEIELLIQAGFTNIEISWSNNenWINYVSNLRLKfpsLNLGSASIKnKKSIDD 94  Prochlorococcus ...
NP_895624    24 LRAQPLVVVLRsehddlegsssrasLFAVFEQLHLLGVRHVELAWSPHpgWMSLMKEVQKCfagLCLGAASIScPEALQS 103 Prochlorococcus ...
NP_896401     5 LSAQPILVVVRpdptdldgddgpgsLLDHLSCLDEVGLRHVEIGWQPDgrWCSFVARVRQRcpsLQLGAASLLtADALAD 84  Synechococcus sp...
ZP_00176955  17 LTKNPAIAVIRtdn--------ieqGINMAKAVAAGGMNIIEITWNSHn-PGEIIQQLKQDlpeCTIGTGTILtLEELKE 87  Crocosphaera wat...
ZP_00327724  10 LHENRIIAVIRask--------mqqAWHMANAVAAGGIRIIEITWNSHq-AAKLITLLRSElpnCIIGTGTLLtLEDLQK 80  Trichodesmium er...
Feature 1                                                         # #                           
1EUA_A       83 VTEAGAQFAISPGLTEPLLKAATEGtIPLIPGIsTVSELMLGMDYGLKEFKFFPAEANg-GVKALQAIAGPFSq-VRFCP 160 Escherichia coli
NP_442562    73 AVASGAQFCFTPHSEPELITSAVAHgIPIIPGAfSPTEIVQAWQRGATAVKVFPIKTLg-GVDYIQALQGPLGq-IPLIP 150 Synechocystis sp...
NP_488811    81 AIACGAEFLFTPHVDPDMIKASVIKnIPIIPGAlTPTEIVSAWAYGASCVKIFPVQAVg-GADYIKSLQGPLGh-IPLIP 158 Nostoc sp. PCC 7120
NP_682718    81 AIAAGAQFLVTPHTAIEVVSVAKDAnCPLILGAlTPTEVLHAWQSGATAVKVFPIMAVg-GASYLQALRPLFAe-IPLIP 158 Thermosynechococ...
NP_874648   103 ITKLGFNYAMSPCWDIELQKRAKALgQALVPGVlSPSDIQQAKNFGYRIIKLFPASVI--GINYLNQIKASINplPFVIA 180 Prochlorococcus ...
NP_892345    95 SIKIGCNYSMMRGWDRDLLNYSNSKnHLLIPGIkHLKDLKQAIDLNCKIIKIYPVKDNieLINISQYKNIDFIa-AGGLS 173 Prochlorococcus ...
NP_895624   104 VAELGLAYAMTSYWDPDLHQKAREMhQLLVPGVfTPTEIQQAYRCGCRLVKLFPASVL--GVDYWRQLAGPMEalPFVIA 181 Prochlorococcus ...
NP_896401    85 LETCGLPFAMSPCLDPALLERARQRgILLVPGVfSPSEIQQAAAMGCGLVKLFPAFSV--GIDYIQRLRAPLGplPQVIA 162 Synechococcus sp...
ZP_00176955  88 AIASGIQFCLTPHVNQTLIKTAINHdIPIIPGAlSPTEIITAWQAGASCVKVFPVQAIg-GIAYIKGLQGPLGs-IPLIP 165 Crocosphaera wat...
ZP_00327724  81 ALKIGCQFVFTPHINPIMIQTAKIAaVPIIPGAlSPTEIVNAWQAGANCVKIFPISAAg-GVNYIKSLQGPLGe-IPLIP 158 Trichodesmium er...
Feature 1       #                                                        
1EUA_A      161 TGGISPANYRDYLALKs-VLCIGGSWLvp------adALEAg-------DYDRITKL 203 Escherichia coli
NP_442562   151 TGGVTLANAQAFLAAG--AIAVGLSGQlfp-----pnLVAIk-------AWREIGDL 193 Synechocystis sp. PCC 6803
NP_488811   159 TGGVTLENAKGLIQAG--AIAVGLGGElfp-----qqLVKEe-------NWPAIAQL 201 Nostoc sp. PCC 7120
NP_682718   159 CGGIGWEDLVPLWRAG--AIAIAMGSQlgtdltklkqQVAQah-----qAYQALGQE 208 Thermosynechococcus elongatus BP-1
NP_874648   181 AGGMSIININSWLEQG--YGAIAVGRE----------LIQKesvdpqlaEWLKATPN 225 Prochlorococcus marinus subsp. marinus ...
NP_892345   174 ISDIPLYKSLGYKAIV--IGDMGFKNN----------KIDPki-----yEWLRRRSN 213 Prochlorococcus marinus subsp. pastoris...
NP_895624   182 AGGLTVQDFIPWLNAGydAVALGRGLVqqgq---ldpALQAy-------LKPPATTA 228 Prochlorococcus marinus str. MIT 9313
NP_896401   163 AGGLGVGDVDAWLTAG--HAAVALGRRv--------iDVQGpdp--allRWLQTTAG 207 Synechococcus sp. WH 8102
ZP_00176955 166 TGGVTLDNAAYFIEAG--AIAVGLSSQlfp-----rhALDDq-------KWDTITAQ 208 Crocosphaera watsonii WH 8501
ZP_00327724 159 TGGVTLENALEFIKVG--AIAVGLSGKlfp-----kkLIITq-------NWQAITQQ 201 Trichodesmium erythraeum IMS101

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