1AJ0,1AD4,1EYE,1F6Y


Conserved Protein Domain Family
Pterin_binding

?
cd00423: Pterin_binding 
Click on image for an interactive view with Cn3D
Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Statistics
?
PSSM-Id: 238242
Aligned: 36 rows
Threshold Bit Score: 152.812
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:substrate binding pocket [chemical binding site]
Evidence:
  • Comment:pterin binding site is highly conserved
  • Comment:phosphate moiety binding site differs slightly
  • Structure:1AD4_A, S. Aureous DHPS bound to 7,8-dihydro-6-hydroxymethylpterin pyrophosphate (DHPPP)
  • Structure:1EYE_A, M. tuberculosis DHPS complexed with pterin monophosphate (DHPP)
  • Citation:PMID 9149138

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1              #                                                                       
1AJ0        15 PHVMGI-LNVTpdsfsd-ggthnsLIDAVKHANLMINAGATIIDVGGEstrpgaaevsveEELQRVIPVVEAIAqrf--- 89   Escherichia coli
1AD4_A       3 TKIMGI-LNVTpdsfsd-ggkfnnVESAVTRVKAMMDEGADIIDVGGVstrpghemitveEELNRVLPVVEAIVgf---- 76   Staphylococcus a...
2495802    160 MRVLGEiVHAPwl----------kEKELEEKIIYYLESGADMIDLGMVsne------nnaDKIKDMLKIARDLTd----- 218  Methanococcus ja...
2622873    160 MRVLAEvANAPil---------leQGRLRERIDYFIRSGADMIDLGMLa----------gEDNSHLIPEIIRTArsaa-g 219  Methanothermobac...
3256669    153 ARIIAEiVDAPkl----------sLEGLVKKANYYLSEGADIVDIGMVage-------tnVKFLDVIPEFREVLgr---- 211  Pyrococcus horik...
6681412    198 LFLVGErLNATgskrfremlfardLEGILALAREQVEEGAHALDLSVAwt--------grDELEDLRWLLPHLAtal--- 266  Thermus thermoph...
13638433   350 VLMIGErTNANgskvfreamiaedYQKCLDIAKDQTRGGAHLLDLCVDyv--------grNGVADMKALAGRLAtvs--- 418  Mycobacterium le...
3122399    340 FLIIGErLNASgskkcrdllnaedWDSLVSLAKSQVKEGAQILDVNVDyv--------grDGVRDMKELASRLVnnv--- 408  Synechocystis sp...
400244     356 FVNVGErTNVTgsakfkrlikeekYSEALDVARQQVENGAQIIDINMDeg--------mlDAEAAMVRFLNLIAgepdia 427  Escherichia coli
6458693    368 FVNVGErTNVTgspkfskailagdYDAGLKIARQQVTNGAQIVDINFDeg--------mlDGEGAMVKFLNLLAgepdis 439  Deinococcus radi...
Feature 1            #                    # #                            #                     
1AJ0        90 evWISVDTSKPEVIRESAKvg--aHIINDIRSlse-------pgaLEAAAETGlPVCLMHMQgnpktmqeapkyddvfAE 160  Escherichia coli
1AD4_A      77 dvKISVDTFRSEVAEACLKlg--vDIINDQWAglyd------hrmFQVVAKYDaEIVLMHNGngnrd-------epvvEE 141  Staphylococcus a...
2495802    219 -nPISVDTLNTKELIEAINlg--aDMILSVDAgnl-------delIPYLKDSEtAVVVLPTNyktny------vpetiEG 282  Methanococcus ja...
2622873    220 evPVSVDSLNPPEIEAAVEcg--aDMILSLDLgny-------revLPLLRKHGvPAVILPTDysegw------vpetvEE 284  Methanothermobac...
3256669    212 evPISLDSLNAKELEAGLDf---vDMILSVDWs------------NVEDLVTDkPVVLIPTDmkngy------fplnpRD 270  Pyrococcus horik...
6681412    267 tvPVMVDSTSPEAMELALKylpgrVLLNSANLedgle---rfdrvASLAKAHGaALVVLAIDekgm--------aktrEE 335  Thermus thermoph...
13638433   419 tlPIMLDSTEIPVLQAGLEhlggrCVINSVNYedgdgpesrfvktMELVAEHGaAVVALTIDeqgq--------artvEK 490  Mycobacterium le...
3122399    409 tlPLMLDSTEWQKMEAGLKvaggkCILNSTNYedgee---rfykvLEIAKEYGaGIVIGTIDedgm--------grtaDK 477  Synechocystis sp...
400244     428 rvPIMIDSSKWDVIEKGLKciqgkGIVNSISMkegvd---afihhAKLLRRYGaAVVVMAFDeqgq--------adtrAR 496  Escherichia coli
6458693    440 rvPLMLDSSKWEILEAGLRrvqgkAVVNSISLkdgea---rflerARLLRRYGaAAVVMAFDeqgq--------adnlAR 508  Deinococcus radi...
Feature 1                               #                                      #   #           
1AJ0       161 VNRYFIEQIARCEqagi-akeKLLLDPGfgfgk--nlshNYSLLARLAEFHhf-----nLPLLVGMSRKsmigqll--nv 230  Escherichia coli
1AD4_A     142 MLTSLLAQAHQAKiagi-psnKIWLDPGigfak--trneEAEVMARLDELVat-----eYPVLLATSRKrftkemmgydt 213  Staphylococcus a...
2495802    283 KIKSLEENIKKLIdag---ieKIVADPIlepi----nnaGCSFIESVIACRefkk-rnkLPLFFGVGNVtelfdad--sn 352  Methanococcus ja...
2622873    285 RVEALDELKRKCSg------iDVIADPVldp------vnSRSIVDSVMACRmyae-rnpDPIFFGVGNVtelldtd--st 349  Methanothermobac...
3256669    271 RVESLEKLKEKALslg---ykRIIADLIle--------hYPGFSRSIVAFSlyrdrnreDIMLAGVGNVtemtdad--sp 337  Pyrococcus horik...
6681412    336 KVRVALRMYERLTehhglrpeDLLFDLLtfpitqgdeesRPLAKETLLAIEelrerlpgVGFVLRVSNVsfgl------- 408  Thermus thermoph...
13638433   491 KVEVAERLINDITsnwgvdksAILIDCLtftiatgqeesRKDGIETIDAIRelkkrhpaVQTTLGLSNIsfgl------- 563  Mycobacterium le...
3122399    478 KFEIAKRAYEAAIafgi-patEIFFDPLalpistgieedRENGKATVDAIRrirqelpdCHILLGVSNVsfgl------- 549  Synechocystis sp...
400244     497 KIEICRRAYKILTeevgfppeDIIFDPNifavatgieehNNYAQDFIGACEdikrelphALISGGVSNVsfsfr-----g 571  Escherichia coli
6458693    509 RREILGRAYRLLTeqadfppqDIIFDPNvltvatgieehDRYALDFIEATRwikenlpaAKVSGGISNVsfsfr-----g 583  Deinococcus radi...
Feature 1                               # #              
1AJ0       231 gpseRLSGSLACAVIAAMQG-AHIIRVHd-vKETVEAMRVVE 270  Escherichia coli
1AD4_A     214 tpveRDEVTAATTAYGIMKG-VRAVRVHn-vELNAKLAKGID 253  Staphylococcus aureus
2495802    353 gvnaLLAAIGAEIGANILFTpEASAKCKfsiKELKIASKMMF 394  Methanococcus jannaschii
2622873    350 gvnaLLAGFGMELGVSILFTpEESGKARgsvYELSVASQMMF 391  Methanothermobacter thermautotrophicus
3256669    338 ginaLLAGIASELRISMLLTtEVSRKCTgsiRELRRAIDMTL 379  Pyrococcus horikoshii
6681412    409 kpraRRVLNSVFLDEARKRG-LTAAIVDagkILPISQIPEEA 449  Thermus thermophilus
13638433   564 npsaRQVLNSVFLHECQEAG-LDSAIVHaskILPINRIPEEQ 604  Mycobacterium leprae
3122399    550 npaaRQVLNSIFLHECMQVG-MDAAIVSankILPLAKIDPEQ 590  Synechocystis sp. PCC 6803
400244     572 ndpvREAIHAVFLYYAIRNG-MDMGIVNagqLAIYDDLPAEL 612  Escherichia coli
6458693    584 nnhvREAMHAVFLYHAIRAG-LDMGIVNagmLAVYEDIEPEL 624  Deinococcus radiodurans

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap