1DMH,1TMX,1S9A,3PCG,1EO9,3PCG,2AZQ,1EOC


Conserved Protein Domain Family
intradiol_dioxygenase

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cd00421: intradiol_dioxygenase 
Click on image for an interactive view with Cn3D
Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Statistics
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PSSM-Id: 238241
Aligned: 146 rows
Threshold Bit Score: 89.2276
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Active site
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:Active site [active site]
Evidence:
  • Structure:1DMH; 4-methylcatechol (substrate) and catalytic Fe ion binding site
  • Structure:3PCG; 4-hydroxyphenylacetate (inhibitor) and catalytic Fe binding site
  • Citation:PMID 9254599

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                 #       #                             
1DMH_A      121 ARMDdgs-----dpnGHTLILHGTIFDADGKPLPN--AKVEIWHANTKGFYShfdptgeqqafNMRRSIITDEnGQYRVR 193 Acinetobacter sp...
CAF18808    120 DSDTva--------eGVPLTLTMTILDMNNNNQPMegAAVYVWHCDAPGRYSmydse-ledetYLRGVQITDKyGQVTFD 190 Corynebacterium ...
ZP_00769273 150 GTGNla--------aGIPLRLELKLVRAGGDCAPLagYALYAWHCDAQGRYSmyssg-vegedYLRGVQAADAnGIVVFQ 220 Chloroflexus aur...
ZP_00411500 133 GTSTtk-------aeGIPLTVTLTLLDNASGCKPLagAAVYAWHCDRDGKYSmydag-lenenFLRGVQEADAnGQVSFT 204 Arthrobacter sp....
AAR27826     72 GDYTgt-------aeGVPTTITLHLQDLAAGCGPGqgMAVYLWHCDRDGQYSlysdg-ltdqnYLRGVQVADAdGTVSFT 143 Rhodococcus sp. TK6
ZP_00872013 137 VGSStat------atGVTMTFTITVVDVNNGCAPLsgYAIYIWHCDKDGNYSlynl---psesYLRGVQVTDSnGQVTFT 207 Novosphingobium ...
ZP_00397870 134 GTGHia--------pGVPLTVILKLVNVNAGCAALsgYAVYLWHCTQDGNYSmysse-vvaedYLRGVQATDKdGTVTFT 204 Deinococcus geot...
ZP_00995526 117 GTSTtk-------aeGVPLTINLTVTDSANGYAAMegVAVYLWHCDRDGNYSmysqg-venenYLRGVQPTNAnGTATFT 188 Janibacter sp. H...
ZP_00379615 111 DGSEtv--------eGVALTFTLKVTDMANDNKAFegVAVYAWHCDAQGRYSmyseg-vedatWLRGVQVADEkGEVTFT 181 Brevibacterium l...
ZP_00571209 122 SDIRssfgdstgtaeGVPMTLALTVRDLANSGTPFagVAVYVWHCDREGRYSlysdg-vtdqnYLRGVQVADSaGMVRFT 200 Frankia sp. EAN1pec
Feature 1             #                    #  # #                                 #             
1DMH_A      194 TILPAGYgcppegptqqllnqlgrhgnRPAHIHYFVSADGh-------RKLTTQINVAgdPYTYDDFaya---------t 257 Acinetobacter sp...
CAF18808    191 TIFPGCYa------------------gRWVHIHFEVFPDRdsitdstnNILTSQIALDe-ASAASVYaldvyg--dsltn 249 Corynebacterium ...
ZP_00769273 221 TIFPGCYs------------------gRWPHVHFEIYPSLdqatsarnVVHTSQLALPe-DICRQVYadpqyg--nslnn 279 Chloroflexus aur...
ZP_00411500 205 TIYPGAYn------------------gRWPHIHFEVFESMsnttaagqVLAVSQIAMTe-AACNEVYatagye--ssarn 263 Arthrobacter sp....
AAR27826    144 SIFPACYs------------------gRCPHIHFEVYDSLevavagdnARLTSQIALPq-DVCETAYagadgy--aqstr 202 Rhodococcus sp. TK6
ZP_00872013 208 TIVPGCYn------------------gRYPHIHFEVFSSLanatsgnyARLISQFAIPa-TVCAAVYatsnyatsstnyn 268 Novosphingobium ...
ZP_00397870 205 TIFPGCYs------------------gRWPHIHFEIYPTLasatsaanKIQTSQLALPe-ATCREVYatsgys--dsirn 263 Deinococcus geot...
ZP_00995526 189 SIFPAAYs------------------gRWPHVHFEVYKSTaeatssgqIVKTSQLALPe-AVCNTVYatagye--qsvnn 247 Janibacter sp. H...
ZP_00379615 182 SVFPACYt------------------gRWTHIHFEIYPDVdsitdadnAIATSQMALPe-DACNAVFelsvyd--gsaen 240 Brevibacterium l...
ZP_00571209 201 SVFPACYs------------------gRWPHVHFEVYPDQasitdsskAIATSQLALPq-DVCAKVFtqpgye--asvrn 259 Frankia sp. EAN1pec
Feature 1                                          
1DMH_A      258 rEGLVVDAVehtdpeaikandvegpfaEMVFDLKL 292 Acinetobacter sp. ADP1
CAF18808    250 lNNITLESDnv--------------fsDGWDQQMA 270 Corynebacterium glutamicum ATCC 13032
ZP_00769273 280 lGRISLERDgi--------------frDGWQTQMA 300 Chloroflexus aurantiacus J-10-fl
ZP_00411500 264 fPNTTLTSDnv--------------fgDDGGIHQL 284 Arthrobacter sp. FB24
AAR27826    203 nLAQISLDSdn--------------vfGDGWDAEL 223 Rhodococcus sp. TK6
ZP_00872013 269 nGNNSTSTDni--------------fsDATSAQLA 289 Novosphingobium aromaticivorans DSM 12444
ZP_00397870 264 lNSISLARDni--------------fsDGYSTQMP 284 Deinococcus geothermalis DSM 11300
ZP_00995526 248 mSQTSLTSDnv--------------fgDDGGIHQL 268 Janibacter sp. HTCC2649
ZP_00379615 241 lSNVSLDDDnv--------------fgDDGGEHQM 261 Brevibacterium linens BL2
ZP_00571209 260 lAQVSLDSDgv--------------fgDDGAASQL 280 Frankia sp. EAN1pec

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