1I8D,1KZL,3A3B,4E0F


Conserved Protein Domain Family
Riboflavin_synthase_like

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cd00402: Riboflavin_synthase_like 
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Riboflavin synthase and similar proteins
Riboflavin synthase catalyzes the dismutation of two molecules of 6,7-dimethyl-8-(1'-D-ribityl)-lumazine (DMRL) to yield riboflavin (vitamin B12) and 4-ribitylamino-5-amino-2,6-dihydroxypyrimidine (RAADP). Riboflavin synthase is a homotrimer and the catalysis does not require any cofactors. Active sites are located between pairs of monomers, but only one active site catalyzes a reaction, the other two sites are inactive. Humans do not produce riboflavin synthase, and thus it is a good target for antimicrobial agents. This family also include lumazine protein (LumP) from bioluminescent bacteria. LumP serves as an optical transponder in bioluminescence emission.
Statistics
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PSSM-Id: 293928
Aligned: 531 rows
Threshold Bit Score: 131.356
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitetrimer
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:4E0F_A; Brucella abortus riboflavin synthase in complex with riboflavin, contacts at 4A
  • Comment:There are three active sites in riboflavin synthase; one active site catalyzes the reaction, while other two sites are inactive.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                               #     ####                ###      #  
1I8D_A      1 MFTGIVQGTAKLVSIdek--pnFRTHVVElpdhmldGLETGASVAHNGCCLTVTEIng-----nHVSFDLMketLRITNL 73  Escherichia coli
4E0F_A      1 MFTGIITDIGKVDRVkpl--neGVLLRIEtay-dpeTIELGASIACSGVCLTVVALpekgsnarWFEVEAWeeaLRLTTI 77  Brucella abortus
CAD67366    7 DIAGQITETDSVRKI-------GVAIPRQhl---vqQPKVGDSVSVNGVCLTVREVhe-----dVFVFDISqvtADATTI 71  Tropheryma whipple...
EDM27154    1 MFGGIIKYKGSVQSIsgn-evdGMVLELNtsl--veQVQIGDSVGVDGVCLTVTEIvs----dtVLKFDIWpesLQRTTL 73  Lentisphaera arane...
ACU54600    1 MFSGIVERTVALLERr------DGRLLFDrsd-wdvAIAPGSSIAFNGACLTAVEIsd-----eVVGVDVVpetLRRTNL 68  Acidimicrobium fer...
ADB29438    1 MFTGKIEHTAIVTAVea----dALRVQIDps----aPLVEGGAVCLDGVRMTMQSVap-----gELVATVTdetRRRTTL 67  Kribbella flavida
EKD75953    1 MFTGIVQDIITIIELtar--adNLRVTVTlpk--nvQYQAGDSILLNGICSTIESItn-----sALTVEFMpqtRTVTTV 71  uncultured bacterium
EKD79402    1 MFTGIVAEQLTIQRIeh----tAAGVAVSfslptwgTLVTGESVLVHGICSTVVTItp-----qGFTVEYMpetIQRTTV 71  uncultured bacterium
KJE76329    1 MFSGIVATTVGYDGQgd---dgIHRFVLGqw---rpTIELGSSISCNGVCLTVIEAta-----nSFGVEIVeetLHRSTF 69  Ferrimicrobium aci...
KKU49269    8 VFTGIIISRGTVRRRqtlrenaAVALAIPr-----aHLRRGDSVAVNGVCLTVTSTar-----gLYNVVIMpetLRRTTL 77  Parcubacteria bact...
Feature 1                                ###                                                  
1I8D_A     74 GdlKVGDWVNVERAAkfsdeigGHLMSGHIMTTAEVAKilt--senNRQIWFKVQdsqlmkyilyKGFIGIDGISLTVGE 151 Escherichia coli
4E0F_A     78 SswQSGRKINLERSLklgdemgGHLVFGHVDGQAEIVErkd--egdAVRFTLRAPeelap-fiaqKGSVALDGTSLTVNG 154 Brucella abortus
CAD67366   72 NvwDVGQFVNIEMPLtpsdpigGHIVQGHVDGVGMIEQi------iDNCLRIKIPdslsl-lvvkSGSIAVDGVSLTVVN 144 Tropheryma whipple...
EDM27154   74 VdlKIDQEVHVDLPLkandfigGHPVLGHVDYVGSILSmsqvdeasQLKIWISLPqefss-lipaRGSIAVDGVSLTITG 152 Lentisphaera arane...
ACU54600   69 GalEPGVLVNVERSVtlqtlldGGLVLGHVDAVATVTDv------dDEGIVVHYPerfep-lvveKGTIVLNGVALTVAE 141 Acidimicrobium fer...
ADB29438   68 DrvAAGARLHFELPVaagdridGHLVQGHVEGVGKVLRvdd--epaGRRVWIKPAdrlla-rlvaKSSVAVNGVSLTVAE 144 Kribbella flavida
EKD75953   72 DnwQVGQLLNCEAPLtlqtkisGSLVTGHIDAVGQVIAleq--stsGTRLTIALVellsa-aivpQGSITIDGVNLTIAS 148 uncultured bacterium
EKD79402   72 GqwTVGQIIHAEPSVtpttklsGSFVSGHIDVVLPVAG--------THPLRFAIPeeyrg-yvfsKGSITVNGVNLTIAE 142 uncultured bacterium
KJE76329   70 SslEPGARVNVEQSVtaatlldGGIVQGHVDCVGRVTHla-----pSLAVSFDPRfdel---vveKGGIVLNGVSLTVTA 141 Ferrimicrobium aci...
KKU49269   78 RriQKGDKVNVELPLrygepygGHFVLGHIDTVGKVNDvkr--gkgGIVARISFParfrh-lvvaKGSIAIDGVSLTIVG 154 Parcubacteria bact...
Feature 1                                                            
1I8D_A    152 vt-------------------ptRFCVHLIPETLerTTLGKKKLGARVNIEIDPQ 187 Escherichia coli
4E0F_A    155 vn-------------------anEFDVLLIRHSLevTTWGERKAGDKVNIEIDQL 190 Brucella abortus
CAD67366  145 vseqlpstanvsgnhgkqncansWFEINLIPETLerTTLGGLQVGQFVNLETDVL 199 Tropheryma whipplei TW08/27
EDM27154  153 re-------------------sdRFAISLIPETLrlTHLDALTEGSQVNIEVDFS 188 Lentisphaera araneosa HTCC2155
ACU54600  142 la-------------------paSARVALIPETRrrTNLGTCEVGAVLNIEFDVI 177 Acidimicrobium ferrooxidans DSM 10331
ADB29438  145 vl-------------------kdRFTVVLVPNTLrrTTLGDLAVGDRVNVESDLV 180 Kribbella flavida
EKD75953  149 iiq------------------pnQVIVYIIPHTFehTTIQQYTAGTSINIEFDYI 185 uncultured bacterium
EKD79402  143 yq-------------------nnHITIQLIPETKsrTSLGSLRVGDHVNVEFDYI 178 uncultured bacterium
KJE76329  142 vg-------------------egAASVALIPETLrrTNLGELEVGAPLNIEFDII 177 Ferrimicrobium acidiphilum
KKU49269  155 vh-------------------hnWVTVALIPHTLqrTTLGALSKGSQVNIEFDIF 190 Parcubacteria bacterium GW2011_GWA2_46_9

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