2E6Z,2XGJ,2JOY,1M1G,1PNU,2DO3,2XZM,2CKK,2E70,3IZS,3IZR


Conserved Protein Domain Family
KOW
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cd00380: KOW 
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KOW: an acronym for the authors' surnames (Kyrpides, Ouzounis and Woese)
KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. The KOW motif contains an invariants glycine residue and comprises alternating blocks of hydrophilic and hydrophobic residues.
Links
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Statistics
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PSSM-Id: 240504
Aligned: 16 rows
Threshold Bit Score: 34.5023
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
2E6Z_A     11 GDNVEVCEGeliNLQ-GKILSVDg----------------nKITImpkhe----------------------------dl 45   human
2XGJ_A    614 GRLVEISVNgkdNYGwGAVVDFAkrinkrnpsavytdhesyIVNVvvntmyidspvnllkpfnptlpegirpaeegeksi 693  baker's yeast
2JOY_A      7 GRICVKVKGreaGSK-CVIVDIIdd---------------nFVLVtgpkd---------------------------itg 43   Sulfolobus solfat...
2DO3_A     21 GDHVKVIAGrfeGDT-GLIVRVEe----------------nFVILfsdl------------------------------t 53   human
2XZM_W    180 GNVCYIQQGnniGRV-GIIQHIEkhqg-----------sfdICHVkda-------------------------------k 216  Tetrahymena therm...
2CKK_A     74 GKRILVLNGgyrGNE-GTLESINek--------------tfSATIvietg---------------------------plk 111  human
2E70_A     21 GQTVRISQGpykGYI-GVVKDATe----------------sTARVelhs------------------------------t 53   human
3IZS_a      8 GKVAVVVRGryaGKK-VVIVKPHdegsk--------shpfgHALVagier---------------------------ypl 51   baker's yeast
3IZR_G     78 GTVLILLAGrymGKR-VVFLKQLqs---------------gLLLItgpfk---------------------------ing 114  bread wheat
ADY48233  241 GACLMILRGplrGQL-GVMERRDkr--------------geQVLLrvit------------------------------n 275  pig roundworm

2E6Z_A     46 kdML-EFPaqELR 57   human
2XGJ_A    694 caVI-PITldSIK 705  baker's yeast
2JOY_A     44 vkRR-RVNilHLE 55   Sulfolobus solfataricus
2DO3_A     54 mhEL-KVLprDLQ 65   human
2XZM_W    217 gnAF-ATRlgNIF 228  Tetrahymena thermophila
2CKK_A    112 grRVeGIQyeDIS 124  human
2E70_A     54 cqTI-SVDrqRLT 65   human
3IZS_a     52 kvTK-KHGakKVA 63   baker's yeast
3IZR_G    115 vpIR-RVNqaYVI 126  bread wheat
ADY48233  276 daLI-KLPfdDVC 287  pig roundworm
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