1ZAV,1S72


Conserved Protein Domain Family
Ribosomal_L10_P0

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cd00379: Ribosomal_L10_P0 
Click on image for an interactive view with Cn3D
Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). Some eukaryotic P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Statistics
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PSSM-Id: 238222
Aligned: 223 rows
Threshold Bit Score: 63.7381
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:23S rRNA interface [nucleic acid binding site]
Evidence:
  • Structure:1S72_G; Haloarcula marismortui L10 ribosomal protein interfaces with 23S rRNA at a kink-turn site, defined at 4A contacts.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          ##  #                                                     ####  #             
1ZAV_A         6 QQKELIVKEMSEIFKKT-------SLILFADFLGFTVADLTELRSRLREkygdgaRFRVvKNTLLNLALKNAeyeGYEE- 77  Thermotoga mari...
1S72_G        14 EWKQEEVDAIVEMIESY-------ESVGVVNIAGIPSRQLQDMRRDLHGt----aELRVsRNTLLERALDDVd-dGLEDl 81  Haloarcula mari...
P33201        21 ENKERIFDEVREALDTY-------RYVWVLHLDDVRTPVLQEIRTSWAGs-----KLIMgKRKVLQKALGEKreeEYKEn 88  baker's yeast
CAL57796      21 EWKSSIIDRARDALELR-------ASAYVFKYTCMRNGTFKEMRQACEEt----tTFFVgSNAVLRVALGKDsesESKEn 89  Ostreococcus tauri
XP_668580     21 KDKSEIIENVHEYIGKF-------KFIYVVKLKNQRNAALKQLRVRLEPg-----KLLVgKNKLLQVAFGADsdsESAKn 88  Cryptosporidium...
XP_823223     21 EEKDELINKIRDALDDY-------TDVYTFELSNIRTNILQQIREERRNd----sRLFLgNNKLLMIALGRDdssSQRPn 89  Trypanosoma bru...
AAX27652      15 PKKKQDVAKVRQYLDEY-------KRVYVVTLHNPRTQKVSEIRKNMPDi-----KLLFgINKVTVWALGKThkdSYRPk 82  Schistosoma jap...
XP_953752     20 KKKIKLVENIRETLENFikkndnsTFVYLISLNNQRNSPLKTLRSLLLPg-----RVFYgKNKVMRIAFGTKpedEIHDn 94  Theileria annul...
XP_001329001  16 EEKVQRGEAIREAVTKF-------DRIYVLRFSSESTEPQTALRRNFRSs-----NLCRdKKTIISHSIGATpetEARPg 83  Trichomonas vag...
XP_001443882  21 EKKELLVKKLKQSLKKY-------QRAIVFQYKNLSTNPLKEIQQAWKAd----sKLFIgKNKVMQVGLGRNe-eQSATk 88  Paramecium tetr...
Feature 1                                                                                        
1ZAV_A        78 -------FLKGPTAVLYVTegdPVEAVKIIYNFYKdkkadlsRLKGGFLe--GKKFTA---------------EEVENIA 133 Thermotoga mari...
1S72_G        82 n-----gYITGQVGLIGTDd-nPFSLFQELEASKTp-----aPIGAGEVa-pNDIVIP---------------EGDTGVD 134 Haloarcula mari...
P33201        89 lyq-lskLCSGVTGLLFTDe-dVNTVKEYFKSYVRs-----dYSRPNTKa-pLTFTIPegivysrggqipaeeDVPMIHS 160 baker's yeast
CAL57796      90 ase-lgkRVRGDCGVMFTDl-sKEDVEATFDRFAVs-----dYARTGQVa-gETVTVPagpv-------rgpsGALMEHT 154 Ostreococcus tauri
XP_668580     89 ahk-issFLRGERGLIFTDl-aPSNLNKVLEESSTm-----eFGREGSLsdiTCVVEPnt------------eLECLYKN 149 Cryptosporidium...
XP_823223     90 lhk-lskYLTGSCGLLFTNl-pHQDVKEYFKGVSAd-----vFARTGQVa-tCPLLLRtg------------pLAQFPHS 149 Trypanosoma bru...
AAX27652      83 lhh-lckYLKGQCALLFTKs-sPSELREQLDAFRSa-----eYCRPGAPa-eQTVRIAsg------------pLPKFPHT 142 Schistosoma jap...
XP_953752     95 ihk-iskNINGETAVLITSe-dPEVVIKKVKEYKVr-----dFSKAGNIa-tDTIVLKvdg----------keFDEIPGS 156 Theileria annul...
XP_001329001  84 lsg-llqYLAGNTGLFMTNe-dDNTVREYLQSMTQp-----eFAKAGFIa-tEDFTVPeg------------pLPQFTFS 143 Trichomonas vag...
XP_001443882  89 nsyllspFLKGETGLLLTNk-tLQEIQEYCDTYKIp-----eFARAGHIs-dQTIVLKegi----------dtLKGFAHS 151 Paramecium tetr...
Feature 1                                                           
1ZAV_A       134 KLPs----KEELYAMLVGRVKApi--------------tGLVFALSGILRN 166 Thermotoga maritima
1S72_G       135 PGPfvgelQSVGADARIQEGSIqvlsdstvldtgeevsqELSNVLNELGIE 185 Haloarcula marismortui
P33201       161 LEPt----MRNKFEIPTKIKAGk---------------iTIDSPYLVCTEG 192 baker's yeast
CAL57796     155 LEP-----TLRKNGMPTRLNRGv---------------iELEADHVLCRQG 185 Ostreococcus tauri
XP_668580    150 AEF-----YMRKQFPQLKPTLFg----------------SDQGKVIICEKG 179 Cryptosporidium hominis TU502
XP_823223    150 MFD-----HLSRLGLPIKLDKGv---------------iVLLRDTTVCEVG 180 Trypanosoma brucei TREU927
AAX27652     143 MEP-----VLRQLGMPVKLVRGv---------------vHLERDYLVCNSE 173 Schistosoma japonicum
XP_953752    157 MEP-----QFRQLGMPTALNMGk---------------iILMGDFTLCEKD 187 Theileria annulata strain Ankara
XP_001329001 144 MDG-----YLRELGLPVQLENGt---------------iFNVRDHKVCTAG 174 Trichomonas vaginalis G3
XP_001443882 152 IEP-----YLRKLGLNTQLINQq---------------iVLNEKFILTQEG 182 Paramecium tetraurelia strain d4-2

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