4UBP,3UBP,1E9Z,2KAU


Conserved Protein Domain Family
Urease_alpha

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cd00375: Urease_alpha 
Click on image for an interactive view with Cn3D
Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Statistics
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PSSM-Id: 238221
Aligned: 18 rows
Threshold Bit Score: 892.837
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:3UBP; Bacillus urease with transition state analogue diamidophosphoric acid
  • Structure:4UBP; bi-nickel center of Bacillus urease
  • Structure:2KAU; carbamylated lysine of Klebsiella aerogenes urease
  • Comment:bi-nickel center stabilizes carbamylated form of active site lysine

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
4UBP_C      2 KINRQQYAESYGPTVGDEVRLADTDLWIEVEKDYT----TYGDEVNFGGGKVLREGMGENGtytr-----tenvLDLLLT 72  Sporosarcina paste...
CAE76567  276 TMDRRAYAVMFGPTVGDMVRLGATDLWIKVEKDYT----VYGDECKFGGGKTLREGMGQATgrsd------eetLDMVVT 345 Neurospora crassa
BAB78715  269 SVDHEKYASMYGPTTGDKIRLGDTDLFAEIEKDYA----IYGDECIFGGGKVLRDGMGQSAgypa------sdcLDTVVT 338 Indian rice
O13465    266 EMNREVYASMFGPTTGDKIKLADMDLWIEVEKDYT----VYGDECKFGGGKVIRDGGGQASgrhd------hevLDLVIT 335 Filobasidiella neo...
BAC84958    4 DIDRENYAELYGPTTGDKVRLGDTELFAKVEEDLR----THGDEAVFGGGKTLRDGLGMAPgvtq-----aegaLDWVLT 74  Haloarcula marismo...
P50042      3 RLSRERYAQLYGPTTGDRIRLADTNLLVEVTEDRCggpgLAGDEAVFGGGKVLRESMGQGRasra------dgaPDTVIT 76  Mycobacterium bovis
P94669      4 EISREQYAGMFGPTTGDSIRLGDTNLFAKIEKDMT----VYGDESKFGGGKCLRDGMGQSAtelrr---dnpkvVDLIIT 76  Clostridium perfri...
3UBP_C      2 KINRQQYAESYGPTVGDEVRLADTDLWIEVEKDYT----TYGDEVNFGGGKVLREGMGENGtytr-----tenvLDLLLT 72  Sporosarcina paste...
Q60058      3 KISRKNYSDLYGITTGDSVRLGDTNLWVKVEKDLT----TYGEESVFGGGKTLREGMGMNStmklddklgnaevMDLVIT 78  Ureaplasma parvum
1E9Z_B      3 KISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYT----IYGEELKFGGGKTLREGMSQSNnps-------keeLDLIIT 71  Helicobacter pylori
Feature 1                                                                        # #          
4UBP_C     73 NALILDYt-GIYKADIGVKDGYIVGIGKGGNPDIMDGVtp--nMIVGTATEVIAAEGKIVTAGGIDTHVHFINPDQVDVA 149 Sporosarcina paste...
CAE76567  346 NALVVDWt-GIYKADIGVKAGVIVGIGKAGNPDVMDGVtp--gMIVGSCTDVVAGEGKIITAGGIDTHIHFICPQQAAEA 422 Neurospora crassa
BAB78715  339 NAVVIDYt-GIYKADIGINGGLIVAIGKAGNPDVMDMDgvneeMIVGVNTEVIAAEGMIVTAGGIDCHVHFICPQLAEEA 417 Indian rice
O13465    336 NALIVDWt-GIYKADIGVKNGIIVGIGKAGNPDMMDGVtd--gMIVGSSTEVISGEKLITTAGRLDVHVHYISPQLMTEA 412 Filobasidiella neo...
BAC84958   75 NATIIDPilGIVAADIGIRNGEIAGIGKAGNPDTMDGVd----MVVGPSTDVYPAEGKIATAGGLDIHIHFNSAQLHEHA 150 Haloarcula marismo...
P50042     77 GAVIIDYw-GIIKADIGIRDGRIVGIGKAGNPDIMTGVhr--dLVVGPSTEIISGNRRIVTAGTVDCHVHLICPQIIVEA 153 Mycobacterium bovis
P94669     77 SAVILDYt-GIYKADIGIRDGKIVAIGNGGNPSIMDNVd----FIVGSSTEALSGEGLIVTAGGIDTHVHFITPAIAYSA 151 Clostridium perfri...
3UBP_C     73 NALILDYt-GIYKADIGVKDGYIVGIGKGGNPDIMDGVtp--nMIVGTATEVIAAEGKIVTAGGIDTHVHFINPDQVDVA 149 Sporosarcina paste...
Q60058     79 NALIVDYt-GIYKADIGIKNGKIAAIGKSGNPHLTDNVd----MIVGISTEISAGEGKIYTAGGLDTHVHWLEPEIVPVA 153 Ureaplasma parvum
1E9Z_B     72 NALIVDYt-GIYKADIGIKDGKIAGIGKGGNKDMQDGVkn--nLSVGPATEALAGEGLIVTAGGIDTHIHFISPQQIPTA 148 Helicobacter pylori
Feature 1                         #                                                 # #       
4UBP_C    150 LANGITTLFGGGTGPAEGSKATTvtpgpwNIEKMLKSTEGLPINVGILGKGHgssIAPIMEQIDAGAAGLXIHEDWGATP 229 Sporosarcina paste...
CAE76567  423 LAAGITTFLGGGTGPSAGTNATTctpgahYMRQMLQACDSLPLNIGITGKGNdssPSALREQILAGACGLKLHEDWGTTP 502 Neurospora crassa
BAB78715  418 IASGITTLVGGGTGPAHGTCATTctpspsHMKLMLQSTDELPINMGFTGKGNttkPDGLAEIIKAGAMGLKLHEDWGSTP 497 Indian rice
O13465    413 LASGITTVIGGGTGPADGSNATTctsssfYMQNMIKATDTIPLNFGFTGKGSdsgTNAMRDIIEAGACGLKVHEDWGATA 492 Filobasidiella neo...
BAC84958  151 LSGGITTMLGGGYGGGATTCTTGp----eNVKRFLQAAEAWPVNVGFYGKGNasdPGPLREQVEAGVCGLKLHEDWGSTP 226 Haloarcula marismo...
P50042    154 LAAGTTTIIGGGTGPAEGTKATTvtpgewHLARMLESLDGWPVNFALLGKGNtvnPDALWEQLRGGASGFKLHEDWGSTP 233 Mycobacterium bovis
P94669    152 LENGTTTIIGGGTGPADGTNSATstpgawNIHQMLRAAEGMPVNMGIQGKAGgaiMDTTAEQIEAGAMALKVHEDWGATL 231 Clostridium perfri...
3UBP_C    150 LANGITTLFGGGTGPAEGSKATTvtpgpwNIEKMLKSTEGLPINVGILGKGHgssIAPIMEQIDAGAAGLXIHEDWGATP 229 Sporosarcina paste...
Q60058    154 LDGGITTVIAGGTGMNDGTKATTvspgkfWVKSALQAADGLSINAGFLAKGQg-mEDPIFEQIAAGACGLKIHEDWGATG 232 Ureaplasma parvum
1E9Z_B    149 FASGVTTMIGGGTGPADGTNATTitpgrrNLKWMLRAAEEYSMNLGFLAKGNasnDASLADQIEAGAIGFXIHEDWGTTP 228 Helicobacter pylori
Feature 1                        #                         #    #                             
4UBP_C    230 ASIDRSLTVADEADVQVAIHSDTLNEAGFLEDTLRAINGRVIHSFHVEGAGGGHAPDIMAMAGHPNVLPSSTNPTRPFTV 309 Sporosarcina paste...
CAE76567  503 AAIDSCLTVCDELDVQCLIHTDTLNESGFVESTIAAFAGRTIHTYHTEGAGGGHAPDIISVVEHPNVLPSSTNPTRPFTR 582 Neurospora crassa
BAB78715  498 AAIDNCLSVAEAFDIQVNIHTDTLNESGCVEHTIAAFKDRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPFTL 577 Indian rice
O13465    493 EVIDRALSMADEYDVQINLHSDTLNESGYVESTLAAIKGRTIHSYHTEGAGGGHAPDIIVVCEYENVLPSSTNPTRPYAV 572 Filobasidiella neo...
BAC84958  227 ETINTCLEVAEDEDVQVCMHTDTLNEAGFLENTFGAVDGRTMHLFHIEGAGGGHAPDIMEMVGEPNMLPSSTNPSMPYTD 306 Haloarcula marismo...
P50042    234 AAIDTCLAVADVAGVQVALHSDTLNETGFVEDTIGAIAGRSIHAYHTEGAGGGHAPDIITVAAQPNVLPSSTNPTRPHTV 313 Mycobacterium bovis
P94669    232 SCIDHALETADKYDVQVSLHSDTLNETGFVEDTIKSIGGRCIHSYHTEGAGGGHAPDLMKVASKNNIIPSSTSPTNPYTV 311 Clostridium perfri...
3UBP_C    230 ASIDRSLTVADEADVQVAIHSDTLNEAGFLEDTLRAINGRVIHSFHVEGAGGGHAPDIMAMAGHPNVLPSSTNPTRPFTV 309 Sporosarcina paste...
Q60058    233 NAIDLALTVADKTDVAVAIHTDTLNEAGFVEHTIAAMKGRTIHAYHTEGAGGGHAPDILETVKYAHILPASTNPTIPYTV 312 Ureaplasma parvum
1E9Z_B    229 SAINHALDVADKYDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTNPTIPFTV 308 Helicobacter pylori
Feature 1                  #                                       #  ##                      
4UBP_C    310 NTIDEHLDMLMVCHHLKQNIPEDVAFADSRIRPETIAAEDILHDLGIISMMSTDALAMGRAGEMVLRTWQTADKMKkQRG 389 Sporosarcina paste...
CAE76567  583 NTLDEHLDMLMVCHHLSKNIPEDVAFAESRIRAETIAAEDVLHDLGAISMMSSDSQAMGRCGEVILRTWNTAHKNKlQRG 662 Neurospora crassa
BAB78715  578 NTVDEHLDMLMVCHHLDRNIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVITRTWQTANKMKrQRG 657 Indian rice
O13465    573 NTLDEHLDMLMICHGLDKSIPEDIAFADSRIRSETVAAEDVLQDTGAISMISSDCQAMGRIGEVVTRTWRTAAKMKqFRG 652 Filobasidiella neo...
BAC84958  307 NTFDEHLDMVMVCHHLNPDVPEDVAFAESRVRAETIAAEDVLHDMGAISMMTSDSQAMGRIAEVIPRTWQTASKMKsQRG 386 Haloarcula marismo...
P50042    314 NTLDEHLDMLMVCHHLNPRIPEDLAFAESRIRPSTIAAEDVLHDMGAISMIGSDSQAMGRVGEVVLRTWQTAHVMKaRRG 393 Mycobacterium bovis
P94669    312 DILPEHLDMLMVCHHLDPKIPEDVRFADSRIRKQTIAAEDVLQDMGALSIMSSDTMAMGRIGEVIMRSWQLADKMKkQRG 391 Clostridium perfri...
3UBP_C    310 NTIDEHLDMLMVCHHLKQNIPEDVAFADSRIRPETIAAEDILHDLGIISMMSTDALAMGRAGEMVLRTWQTADKMKkQRG 389 Sporosarcina paste...
Q60058    313 NTIAEHLDMLMVCHHLNPKVPEDVAFADSRIRSQTIAAEDLLHDMGAISIMSSDTLAMGRIGEVATRTWQMAHKMKaQFG 392 Ureaplasma parvum
1E9Z_B    309 NTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGAFSITSSDSQAMGRVGEVITRTWQTADKNKkEFG 388 Helicobacter pylori
Feature 1                                                                                     
4UBP_C    390 PLaee-----kngSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEPKFFGVKADRVIKGGIIAYAQIGDP 464 Sporosarcina paste...
CAE76567  663 PLpedq---gtggADNHRVKRYISKYTINPALAQGMSHLIGSIEPGKLADLVVWDPAWFGTKPSLVIKSGLIASAMMGDP 739 Neurospora crassa
BAB78715  658 RLpissspdaaedNDNFRIRRYIAKYTINPAIVNGFSDFVGSVEVGKLADLVIWKPSFFGAKPEMVIKGGAIACANMGDP 737 Indian rice
O13465    653 PLegd-----eptRDNNRVKRYVAKYTINPAITHGMSHLIGQVAVGCLADLVLLDGESFGARPEMILKGGVIAWAAVGDA 727 Filobasidiella neo...
BAC84958  387 PLpede----gtgADNHRIKRYIAKYTVNPAISAGIEEHVGTLEPGKLADICLWDPAFFGVKPAMTFKGGFPVHSEMGEA 462 Haloarcula marismo...
P50042    394 ALegdps--gsqaADNNRVRRYIAKYTICPAIAHGMDHLIGSVEVGKLADLVLWEPAFFGVRPHVVLKGGAIAWAAMGDA 471 Mycobacterium bovis
P94669    392 PLegd-----seyIDNNRIKRYISKYTINPAIAEGISDYVGSIEEGKYADLVLWEPAMFGAKPKMILKSGMIAYGVMGDS 466 Clostridium perfri...
3UBP_C    390 PLaee-----kngSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEPKFFGVKADRVIKGGIIAYAQIGDP 464 Sporosarcina paste...
Q60058    393 SLkgd-----sefSDNNRVKRYISKYTINPAIAHGVDSYIGSLEVGKLADIVAWEPKFFGAKPYYVVKMGVIARCVAGDP 467 Ureaplasma parvum
1E9Z_B    389 RLkee-----kgdNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDA 463 Helicobacter pylori
Feature 1                                                                                     
4UBP_C    465 SASIPTPQPVMGRRMYGTVgdlihdTNITFMSKSSIQqgvpaklGLKRRIGTVKNCRNIGKKDMKw-NDVTTDIDINPET 543 Sporosarcina paste...
CAE76567  740 NASIPTVQPVIARPMFAPMva---kSKVLFVSQASLDsgaiegyGLKSRVEAVKGCRTVGKKDMKf-NERMPRMKVDPER 815 Neurospora crassa
BAB78715  738 NASIPTPEPVMMRPMFGAFggagsaNSIAFVSKAAKEagvavqyKLGKRVEAVGRVRGLTKLNMKl-NDALPKIDVDPET 816 Indian rice
O13465    728 NASIPTVQPVLGRPMWALSlrp-lhSIQLFVSQASLDkdlvkryRLRKRAEAVKNCRSIGKKDMKw-NDTMPKMTVDPET 805 Filobasidiella neo...
BAC84958  463 NGSLMTCEPILQRERAGAVgkakhaISLSFVSPAAAEagideeyGLDSRVVPIEGARTPGKDDMVynSYCPDDIEVDPET 542 Haloarcula marismo...
P50042    472 NASIPTPQPVLPRPMFGAAaataaaTSVHFVAPQSIDarladrlAVNRGLAPVADVRAVGKTDLPl-NDALPSIEVDPDT 550 Mycobacterium bovis
P94669    467 NASIPTTQPRTMRELFGLTgksrqhVNMTFVSTYAYEhnikeelGLERNVLPVHNVRTVTKKDMKf-NSETPKIEIDPLT 545 Clostridium perfri...
3UBP_C    465 SASIPTPQPVMGRRMYGTVgdlihdTNITFMSKSSIQqgvpaklGLKRRIGTVKNCRNIGKKDMKw-NDVTTDIDINPET 543 Sporosarcina paste...
Q60058    468 NASIPTCEPVIMRDQFGTYgrlltnTSVSFVSKIGLEngikeeyKLEKELLPVKNCRSVNKKSMKw-NSATPNLEVDPQT 546 Ureaplasma parvum
1E9Z_B    464 NASIPTPQPVYYREMFAHHgkakydANITFVSQAAYDkgikeelGLERQVLPVKNCRNVTKKDMQf-NNTTAHIEVNPET 542 Helicobacter pylori
Feature 1                                                        
4UBP_C    544 YEVKVDGEVLTCEPVk-------------------------eLPMAQRYFL 569 Sporosarcina pasteurii
CAE76567  816 YTVEADGEVCTAEPSs-------------------------eLPLTQSYFV 841 Neurospora crassa
BAB78715  817 YTVTADGEVLRCQPTp-------------------------tVPLSRNYFL 842 Indian rice
O13465    806 YDVRADGVLCDVPPAd-------------------------kLPLTRRYFV 831 Filobasidiella neoformans
BAC84958  543 FEVRVDGEHVTCEPSs-------------------------eLPLAQRYLL 568 Haloarcula marismortui
P50042    551 FTVRIDGQVWQPQPAa-------------------------eLPMTQRYFL 576 Mycobacterium bovis
P94669    546 YDVTVDGKLITCDPAr-------------------------eLPLAQRYLY 571 Clostridium perfringens
3UBP_C    544 YEVKVDGEVLTCEPVk-------------------------eLPMAQRYFL 569 Sporosarcina pasteurii
Q60058    547 FDAAVDFNDLENWLEqsaselakklkktssgkyildaeplteAPLAQRYFL 597 Ureaplasma parvum
1E9Z_B    543 YHVFVDGKEVTSKPAn-------------------------kVSLAQLFSI 568 Helicobacter pylori

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