1RYT,1BRF,1IRO,1RDG,2RDV,6RXN


Conserved Protein Domain Family
rubredoxin_like

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cd00350: rubredoxin_like 
Click on image for an interactive view with Cn3D
Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Statistics
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PSSM-Id: 238210
Aligned: 72 rows
Threshold Bit Score: 32.1396
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
iron binding
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:iron binding site [ion binding site]
Evidence:
  • Structure:2RDV; Desulfovibrio vulgaris rubredoxin with bound iron
  • Structure:1RYT; Desulfovibrio vulgaris rubrerythrin with bound iron
  • Citation:PMID 8646540

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #                             #  #          
1RYT_A      154 KWRCRNCGYVHEGtg-----------------aPELCPACAHPKAHFELL 186 Desulfovibrio vulgaris
P30820      171 FHLCPICGYIHKGe------------------dFEKCPICFRPKDTFTAY 202 Desulfovibrio vulgaris subsp. vulgaris (strain...
NP_662214   134 IWLCPVCGHIELGa------------------pPEHCPICNVKASAYIQI 165 Chlorobium tepidum TLS
ZP_00097141 134 YYLCPVCGNIEKYi-------------------PEKCSICNVPGDKFIKY 164 Desulfitobacterium hafniense
ZP_00102827 115 VYVCEICGFVYIGee-----------------aPAICPVCKVPRKKITEV 147 Desulfitobacterium hafniense
ZP_00099396  56 HYRCSICGYLHEGel----------------taDFKCPICKQPASVFQLV 89  Desulfitobacterium hafniense
NP_809129     3 KFRCTVCGYVYEGda-----------------aPEKCPLCKAPASKFVEV 35  Bacteroides thetaiotaomicron VPI-5482
NP_568749    63 AYICRDCGYIYNDrtpfd-----------klpdNYFCPVCAAPKRRFRAY 101 thale cress
ZP_00059719 181 KYVCSICGYEYTGdipfe-----------dlpeDYVCPVCGQPKSVFVKK 219 Clostridium thermocellum ATCC 27405
2RDV_A        3 KYVCTVCGYEYDPaegdpdngvkpgtafedvpaDWVCPICGAPKSEFEPA 52  Desulfovibrio vulgaris

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