1JJ2,1ML5,1I4J,1XBP,1S1I,2AWB,1BXE,1YJ9


Conserved Protein Domain Family
Ribosomal_L22

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cd00336: Ribosomal_L22 
Click on image for an interactive view with Cn3D
Ribosomal protein L22/L17e. L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit. It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper folding and stabilizing the conformation of 23S rRNA. L22 is the largest protein contributor to the surface of the polypeptide exit channel, the tunnel through which the polypeptide product passes. L22 is also one of six proteins located at the putative translocon binding site on the exterior surface of the ribosome.
Statistics
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PSSM-Id: 238205
Aligned: 132 rows
Threshold Bit Score: 72.1382
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
protein-rRNAputative
Conserved site includes 24 residues -Click on image for an interactive view with Cn3D
Feature 1:protein-rRNA interface [nucleic acid binding site]
Evidence:
  • Structure:1JJ2_Q: interface with 1JJ2_0 (23S rRNA), defined using 3.5 A contacts
  • Comment:L22 interacts with all six domains of 23S rRNA

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        # #  # ###  #   #  #                                                         
1JJ2_Q     14 AKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAViegdqpvpfkqhnsgv--ghkskvdgwdagrypeKASKAFLDL 91  Haloarcula marismo...
EAL47158   15 AQARGDNLKVHFKNTYETADAIRGMKVARAQEFLKNViikkeivpfrkhnggvgrkaqckglncafgrwpvKSAQFILKL 94  Entamoeba histolyt...
EAN33004   15 AKAYGAYLRVHFKNTYETATAIKGMLVKDAKRYLNDVierkrcvpfrkfrggvgrcaqakafkhtqgrwpeKSCKFLLDL 94  Theileria parva
AAP80702   17 VKARGSDLRVSFKNTYETGSAIKGMKLERAQKYLQNVidkkeivpfrrykigvkgkpqcrthkvavgrwprKSCEFILGL 96  Griffithsia japonica
AAW47435   15 CKAKGTNFRVHYKNTSETGRAIKGMHLHKARSYLSNVvehkqcipfrrhkggvgrcaqaknfnttqgrwpkKSCEFMLQL 94  Pectinaria gouldii
AAK39769    8 ISCMLKNQKVHLKNTREVGCCIIGMTLGRAENFLKNVilkkeivpfkvyrygigrksqvnqsknisgrwpkKSAKIILSL 87  Guillardia theta
EAL38296   15 VMCKGSDLRVSYKNTYETATAIKGMYLLDARQYLLDViakkrcvpfrrfnggvgrtakanefkltqgrfpeKSCRFLLDL 94  Cryptosporidium ho...
EAN79445   15 AKAKIADLRCHYKNTFETANVINGMKLRKAQQLYRQVlaktrcipfkryngkigntaqakewgqtkgrwprKSVVAMLSL 94  Trypanosoma brucei
EAA39378   14 GKSRRDGVKASFKNTYSTCRAIKGMGVKRAFAYLDNVlnhkeivpffkfykgvgrhsqargsgtdkgrwpeKSVVVVKDI 93  Giardia lamblia AT...
XP_577361 604 GQLQMGLLHSPEKNTRETAQAIKGIHTRKATKYPKDVtl-------------------------------kKQCVPFRWY 652 Norway rat
Feature 1       #   #  #            # ### #  #           ######        
1JJ2_Q     92 LENAVGNADHqgfd-geaMTIKHVAAHKVGEQQGRkpramgraSAWNSPQVDVELIL 147 Haloarcula marismortui
EAL47158   95 LKNAVDNAKAkgln-talLTVSHIAVQEARSSRRRlyrahgsiNSFSSSPCHIELIL 150 Entamoeba histolytica HM-1:IMSS
EAN33004   95 LKNLESNAEVkgle-qskLRLEHVQVNRAPVGRRRsyrahgriIPFLSHPCHVELIA 150 Theileria parva
AAP80702   97 LKNAESNAELrgid-tdaLVVTHMQVNKARRGRRRtfrahgriNAFMSQPCHVEMFL 152 Griffithsia japonica
AAW47435   95 LKNAESNAELrgld-vdsLVVAHVSVDAAAKMRRRtyrahgriNPYMSSPCHIELCL 150 Pectinaria gouldii
AAK39769   88 IKNLNSIVSKnkse-dnpFYIKNININQAVRGRRRtfrahgrvNSFESNPCHIRISL 143 Guillardia theta
EAL38296   95 LQNAESNCDMkgld-vdrLMLVSVVVTHAPFNRRRtfrahgriTPFKSQPCNIQLIF 150 Cryptosporidium hominis
EAN79445   95 LKNAEANAIEkgld-pgkMVIKHVQVDQAPRVRRRtfrahgriTPYMRSPCHVQLFM 150 Trypanosoma brucei
EAA39378   94 LKQAVSNAKHahkkeedeLYVISYCVNRARGRRRRtfrahgriSKYESQPCHVELIV 150 Giardia lamblia ATCC 50803
XP_577361 653 NGGVGFGCRF--------SVIEHIQVNMAPKTRQRtyrahgriNPSMSSPCHTEMIL 701 Norway rat

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