1EI1,1Z5C,1QZR,1MX0,1EA6,1B63,1KIJ,1ZXN


Conserved Protein Domain Family
TopoII_MutL_Trans

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cd00329: TopoII_MutL_Trans 
Click on image for an interactive view with Cn3D
MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. The GyrB dimerizes in response to ATP binding, and is homologous to the N-terminal half of eukaryotic Topo II and the ATPase fragment of MutL. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. Included in this group are proteins similar to human MLH1 and PMS2. MLH1 forms a heterodimer with PMS2 which functions in meiosis and in DNA mismatch repair (MMR). Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families.
Statistics
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PSSM-Id: 238202
Aligned: 294 rows
Threshold Bit Score: 32.6182
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ATP binding
Conserved site include 1 residue -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:1B63_A, Escherichia coli MutL bound with Adpnp ((non-hydrolyzable ATP analog), contacts at 3.5A
  • Structure:1EI1_A, E. Coli Dna Gyrase B dimer bound with ADPNP (non-hydrolyzable ATP imido analog), contacts at 3.5A
  • Structure:1QZR_B, Saccharomyces cerevisiae, topo IIA dimer bound to ADPNP, contacts at 3.5 A
  • Structure:1Z5C_B, Sulfolobus shibatae Topo Vi-B dimer, ADP contacts at 3.5A
  • Comment:conserved Lys residue from the transducer domain interacts with the gamma-phosphate of bound nucleotide.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
1EI1_A    221 IKAFVEYLNknktpihpnIFYFStekd------gigVEVALQwndg------fqeNIYCFTNNIPQrd----gGTHLAGF 284 Escherichia coli
1B63_A    210 KERRLGAICgtaf--leqALAIEwqhg------dltLRGWVAdpnhtt--palaeIQYCYVNGRMMr-----dRLINHAI 274 Escherichia coli
CAC24690  411 LRLGIIKELhp-----dmVATYSgsaqvf-eghpfiVEAGVSlggrd---vkqgiNIFRFANRIPLlfeqgadVVTRTAL 481 thale cress
O74020    367 IKRGLTGILkp-----efVTAVTrspkvyaggipfqVEVGLAyggq-----isgsEILRYANRVPLlfd-agsCVITSAV 435 Pyrococcus horikoshii
Q9HR31    518 LEAGLRTEFda-----dfYAAATrdadvh-ggdpfiVEAGIAyggdid--seggvQLMRFANRVPLvyq-rgaCATTDVL 588 Halobacterium sp. ...
AAM05000  325 IYRGLEKETnv-----dfIATSTrkpavy-sgnpfvVEVGLAyggnlp--keekiSIMRFANRVPLlyq-qggCVTTHAV 395 Methanosarcina ace...
CAE80645  324 LSKSITRLGei-----dfFAVVTrkptic-dfkpvvVEVALArfkdrnqqndspvTLLRFANRVPLqfd-ksgCAITWAI 396 Bdellovibrio bacte...
AAR38998  329 LQIGITKEYdv-----eyLAVKTrkpkvysggipflVEVAIGygdf------ekaEILRFANRTPLlyk-ageCAIVKAI 396 Nanoarchaeum equit...
CAE47077  438 LRLGIIKELhp-----dlVATHAsspqvf-eghpfiVEAGISiggkd---vkhglNIFRYANRIPLlfeqgadVITRTAL 508 Indian rice
AAZ32519  322 IKKGLKNVLgalr-pgfyAQPITrepkvy-ggnpfiVEAGIVyggdlp--kdqqvRILRFANRVPLlyq-qgaDVITKAI 396 uncultured euryarc...
Feature 1                                                           #    
1EI1_A    285 RAamtrtlnaymdkegyskkakvsatgddaregLIAVVSVKVPD--PKFS-SQTKDKLV 340 Escherichia coli
1B63_A    275 RQacedkl--------------------gadqqPAFVLYLEIDPhqVDVNvHPAKHEVR 313 Escherichia coli
CAC24690  482 KRinwnsyk-----------------inqtqdkIGVFVSIVSTK--IPFK-GTGKEYIG 520 thale cress
O74020    436 RSidwkryki----------------dsfdsapLVVLVNVISVH--VPYT-STGKQSIA 475 Pyrococcus horikoshii
Q9HR31    589 GDigwrnynlsq-----------pggsglpqgpAVIMVHVASTN--VPFT-SESKDAIA 633 Halobacterium sp. NRC-1
AAM05000  396 EDirwkqyglnq------------pgggvpigpVLLLIHVASIN--VPFT-SESKDAIA 439 Methanosarcina acetivorans C2A
CAE80645  397 ESvnwkayglgq------------pkdslplgpYIFAVSIVSPF--IKFK-NASKETID 440 Bdellovibrio bacteriovorus HD100
AAR38998  397 KDinwkrygfe--------------vennlpknALILVHIASVK--VPYT-SESKEAIA 438 Nanoarchaeum equitans Kin4-M
CAE47077  509 KRinwssyk-----------------inqqqdkIGVFVSIVSTK--IPFK-GTGKEYIG 547 Indian rice
AAZ32519  397 SSvdwrrygleq-----------rggqgipvgpAIILVHVASTR--VPFT-SEAKEAIA 441 uncultured euryarchaeote Alv-FOS4

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