1MJ1,1FJG,1S1H


Conserved Protein Domain Family
Ribosomal_S12_like

?
cd00319: Ribosomal_S12_like 
Click on image for an interactive view with Cn3D
Ribosomal protein S12-like family; composed of prokaryotic 30S ribosomal protein S12, eukaryotic 40S ribosomal protein S23 and similar proteins. S12 and S23 are located at the interface of the large and small ribosomal subunits, adjacent to the decoding center. They play an important role in translocation during the peptide elongation step of protein synthesis. They are also involved in important RNA and protein interactions. Ribosomal protein S12 is essential for maintenance of a pretranslocation state and, together with S13, functions as a control element for the rRNA- and tRNA-driven movements of translocation. S23 interacts with domain III of the eukaryotic elongation factor 2 (eEF2), which catalyzes translocation. Mutations in S12 and S23 have been found to affect translational accuracy. Antibiotics such as streptomycin may also bind S12/S23 and cause the ribosome to misread the genetic code.
Statistics
?
PSSM-Id: 238196
Aligned: 3 rows
Threshold Bit Score: 67.4245
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:aminoacyl-tRNA interaction site (A-site) [nucleic acid binding site]
Evidence:
  • Comment:The A (acceptor)-site is the attachment site for an incoming aminoacyl-tRNA.
  • Structure:1MJ1_O; Escherichia coli S12 binds aminoacyl-tRNA at the A-site

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                  ######                    ##  #######              
1MJ1_O     19 RKKSKVPALkGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLT-SGYEVTAYIPGEG--HNLQEHSVVLIRG----GRVK 91  Escherichia coli
1FJG_L     19 RKKSKVPALkGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLT-SGYEVTAYIPGEG--HNLQEHSVVLIRG----GRVK 91  Thermus thermophilus
1S1H_L      8 GTAFKSSPFgGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIkNGKKVTAFVPNDGclNFVDENDEVLLAGfgrkGKAK 87  baker's yeast
Feature 1                              
1MJ1_O     92 -DLPGVRYHIVR--GVYDAAGVKDR 113 Escherichia coli
1FJG_L     92 -DLPGVRYHIVR--GVYDAAGVKDR 113 Thermus thermophilus
1S1H_L     88 gDIPGVRFKVVKvsGVSLLALWKEK 112 baker's yeast

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap