2AFK,1G20,1MIO,1QH8,1QH8,1MIO,2AFK


Conserved Protein Domain Family
Oxidoreductase_nitrogenase

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cd00316: Oxidoreductase_nitrogenase 
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The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster from which, electrons are transferred to the P-cluster of the MoFe and in turn, to FeMoCo at the site of substrate reduction. The V-nitrogenase requires an iron-vanadium cofactor (FeVco), the iron only-nitrogenase an iron only cofactor (FeFeco). These cofactors are analogous to the FeMoco. The V-nitrogenase has P clusters identical to those of MoFe. Pchlide reductase and chlide reductase participate in the Mg-branch of the tetrapyrrole biosynthetic pathway. Pchlide reductase catalyzes the reduction of the D-ring of Pchlide during the synthesis of chlorophylls (Chl) and bacteriochlorophylls (BChl). Chlide-a reductase catalyzes the reduction of the B-ring of Chlide-a during the synthesis of BChl-a. The Pchlide reductase NB complex is a an N2B2 heterotetramer resembling nitrogenase FeMo, N and B proteins are homologous to the FeMo alpha and beta subunits respectively. The NB complex may serve as a catalytic site for Pchlide reduction and, the ZY complex as a site of chlide reduction, similar to MoFe for nitrogen reduction.
Statistics
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PSSM-Id: 238193
Aligned: 153 rows
Threshold Bit Score: 149.735
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2AFK_B       63 VNPAKACQPLgAVLCALgfeKTMPYVHGSQGCVAYFrsyfnrh---frepvscVSDSMTEDAAVFgg-qQNMKDGLQNCK 138 Azotobacter vine...
BAA96511     57 DQPQSMCPAFgSLRVGLrmkRTATVLSGSACCVYGLtftshfygarrtvgyvpFSSETLVTGKLFedikEAVEDLADPEH 136 Erythrobacter lo...
Q9F6X5        5 YWMYEGTAHHgVGRIANsmrNVHAVFHAPQGDDYVNaifamld---rtpnfpaMTTSVVSGTDLArg-tIRLPDTLRQVE 80  Chloroflexus aur...
NP_663025     5 FWLYEGTALHgVSRVTNsmkGVHTVYHAPQGDDYITatytmle---rtpefpkLSISVVRGQDLArg-tSRLPGTVEQVD 80  Chlorobium tepid...
114855        5 LWTYEGPPHVgAMRVATamkDLQLVLHGPQGDTYADllftmie---rrnarppVSFSTFEASHMGtdtaILLKDALAAAH 81  Rhodobacter caps...
Q9JPA3        5 LWTYEGPPHVgAMRVATaldDVHYVLHAPQGDTYADllftmie---rlprrppVTYTTFQARDLGgdtaELFKTACSQAF 81  Rubrivivax gelat...
NP_874938     5 LWTYEGPPHIgAMRIATsmkGLHYVLHAPQGDTYADllftmie---rrgsrppVTYTTFQARDLGgdtaELVKGHIFEAV 81  Prochlorococcus ...
AAC84030     13 YWMYEGTALSgITRVAGsmqKVHTVIHGPQGDGYVNvmysmle---rfhtippFTLSTIGRREMAqgsrARLVETVRRVD 89  Heliobacillus mo...
BAA94036     57 DQPQSMCPAFgSLRVGLrmrRTATVLSGSACCVYGLsftahfygarrsigyvpFSSETLVTGKLFedirEAVHKLADPKQ 136 Rubrivivax gelat...
ZP_00765636  26 LHPQTMCPAFgALRVLTrieGAQPAMVTDTGCLYGLtfvthfyaarksivapaLGTAELSSGKVQeaanAAIAEAASAAN 105 Chloroflexus aur...
2AFK_B      139 ATykp---dmIAVSTTCMAEVIGDDLNAFInnskkegfipdefPVPFAHTPSFv--gSHVTGWDNMFEgiaryftlksm- 212 Azotobacter vine...
BAA96511    137 YDavvvtnlcVPTASGVPLRLLPDQINGVRii---------giDVPGFGIPTHaeakDVLAGAMLAYArkeamegpva-- 205 Erythrobacter lo...
Q9F6X5       81 ERvhp---dlIVVVASCSTILLQENLEIAAqhag------lqcEVMVYDANPYrm-qEIVAAESLFTDlvkrfakp---- 146 Chloroflexus aur...
NP_663025    81 KHykp---elIVVAPSCSTALLQEDLGQMArasg-----vdqsKIMVYAVNPFrv-aENEAAEGLFTElvrrfaae---- 147 Chlorobium tepid...
114855       82 ARykp---qaMAVALTCTAELLQDDPNGISraln------lpvPVVPLELPSYsr-kENYGADETFRAlvralavp---- 147 Rhodobacter caps...
Q9JPA3       82 ERfrp---naMLVGASCTAELIQDDPGGLArala------lpiPVVPLELPSYqr-kENWGASETFYQvvrtlagprapa 151 Rubrivivax gelat...
NP_874938    82 ERfkp---eaLLVGESCTAELIQDQPGSLAkgmg------lniPIVSLELPAYsk-kENWGASETFYQlirgllkeised 151 Prochlorococcus ...
AAC84030     90 AQhqp---dvIVITPTCSSTLLQEDLLAVArtlgk----qtkaKLIVPNVNAFrd-lEHRAMDDFLTQivaefate---- 157 Heliobacillus mo...
BAA94036    137 YDavvvinlcVPSASGVPLRLLPKEIDGVRii---------giDVPGFGVPTHaeakDVLAGAMLRVArgeaeagpvaa- 206 Rubrivivax gelat...
ZP_00765636 106 TTfipvislcVAETAGLAEELLPKEIDGKPv-----------iLVRVPAYAIHshpeAKDVALAAVMRrfidtsg----- 169 Chloroflexus aur...
2AFK_B      213 -------ddkvvgsnkkINIVPGFetyl---gnfrVIKRMLSEMGVGYSLlsdpeevldtpadgqfrmyaggttqEEMKD 282 Azotobacter vine...
BAA96511    206 -------tpekrsdkptVALLGEMfpa-----dpvVIDQMLEPLGLAAGPvv---------------------ptREWRE 252 Erythrobacter lo...
Q9F6X5      147 ---------qprterptVNILGPAslgfharhdliSLRRMLKTLGLEVNVvapw-----------------gasiADLRR 200 Chloroflexus aur...
NP_663025   148 ---------qpktekpsVNLLGFTslgfhlrsnltSLRRMLKTLGIEVNVvapw-----------------gagiDDLKK 201 Chlorobium tepid...
114855      148 ---------mertpevtCNLLGATalgfrhrddvaEVTKLLATMGIKVNVcapl-----------------gaspDDLRK 201 Rhodobacter caps...
Q9JPA3      152 pg--tprparepgakpcCNLLGPTalgfrhrddvrEITGLLNELGIEVRTvapl-----------------gasaDDIAR 212 Rubrivivax gelat...
NP_874938   152 ssnnakqswqeegrrprVNLLGPSllgfrcrddvlEIQKILGENGIDINViapl-----------------gaspSDLMR 214 Prochlorococcus ...
AAC84030    158 ---------qpkteqfsVNLIGPSylgfhqlhdmqEIRSMLESLGVAVNAvipy-----------------gasiKTLQE 211 Heliobacillus mo...
BAA94036    207 -------prggvsekptVTLLGEMfpa-----dpvGIGMMLEPMGLAAGPvv---------------------ptREWRE 253 Rubrivivax gelat...
ZP_00765636 170 -----------dhepgtLALIGEVfpa-----dplLIDGVVRRMGGRVVTtl---------------------pgRHVDE 212 Chloroflexus aur...
2AFK_B      283 APNALNTVLLqpwhLEKTKKFVEGt-wKHEVpklnipmglDWTDEFLMKVSEisg----------------qpiPASLTK 345 Azotobacter vine...
BAA96511    253 LYAALDCSVVaaihPFYTASIREFehaGRPVigsa-pvgaDGTAAWLDSLGDvmglp-------------adkvAGVKNA 318 Erythrobacter lo...
Q9F6X5      201 LPAAWLTIAPyrelGLRAAIYLEEq-fGVPAllda-pigvQPTLRWIERLREllaqagadv-----pmppltafSLDGMS 273 Chloroflexus aur...
NP_663025   202 LPAAWVNIAPfreiGCQAAGYLKEk-fGMPSitea-plgvNATLRWLRAIIAevnkigaekgmapmampelrdfSLDGQS 279 Chlorobium tepid...
114855      202 LGQAHFNVLMypetGESAARHLERa-cKQPFtkiv-pigvGATRDFLAEVSKitgl---------------pvvTDESTL 264 Rhodobacter caps...
Q9JPA3      213 LGEADFNVVLypetAQQAAGWLQRf-fGQPFtkti-pigvKATKAFIAEVLQlaglp-------------adtpLPDALS 277 Rubrivivax gelat...
NP_874938   215 LPKADANVCLypeiAESTCLWLERn-fKTPFtkvv-pigvKATQDFLEELYEllgme------------vsnsiSNSDQS 280 Prochlorococcus ...
AAC84030    212 LTKAHLNICLyheyGQSACELLKEk-fGIDYivat-pigiRLTSQFVKAIGErag----------------lpvESYIRQ 273 Heliobacillus mo...
BAA94036    254 LYAALDCAAVaaihPFYTASVREFetaGRPIvasa-pvghDGTEAWLQAVGRacnvp-------------qamiDASKNK 319 Rubrivivax gelat...
ZP_00765636 213 IRQAGRAAAVaalhPFYRETIGVLrerGVAVisga-pigaDGSAAWLRAIGAaleld-------------edvvERVAAE 278 Chloroflexus aur...
2AFK_B      346 ERGRLVDMMtds----htWLHGKRFALWGDPDFVMGLv-kFLLELGCEpVHILCHNgnkrwkkavdailaaspygkNATV 420 Azotobacter vine...
BAA96511    319 MIGACKGAIas------aPIKGRVTVSGYEGSELLVAr--LLIESGADvPYVGSACpktkwsdp----drewleakGVRV 386 Erythrobacter lo...
Q9F6X5      274 APSAVPWFArta---dmdSFSGKPAFVFGDATHVVGVtrfLRDELGMPiAGAGTYVkhqadwv------reqltgyVDEV 344 Chloroflexus aur...
NP_663025   280 APSSVPWFArta---dmeSFSNKRAFVFGDATQVVGVtkfLKDELGMKiIGAGTYLpkqadwvr-----eqlegylPGEL 351 Chlorobium tepid...
114855      265 RQPWWSASVds------tYLTGKRVFIFGDGTHVIAAariAAKEVGFEvVGMGCYNremarpl------rtaaaeyGLEA 332 Rhodobacter caps...
Q9JPA3      278 RSPWYSRSVds------tYLTGKRVFIFGDATHAIAAarvATEEMGFTvVGLGTYSrefardv------rdaakhyGVEA 345 Rubrivivax gelat...
NP_874938   281 KLPWYSKSVds------nYLTGKRVFIFGDGTHVLAAariANEELGFEvVGIGTYSremarkv------raaatelGLEA 348 Prochlorococcus ...
AAC84030    274 NLAPSGTIArftksvdslSALFGKRAVVFGDYSHAVGmthLLREIGVRvVWAGTYMktmekaf------qasigglADEV 347 Heliobacillus mo...
BAA94036    320 WLRAIKGALaa------tPIKGRVVVSGYEGSELLVAr--LLVESGAEvPYVGTACpktpwsap----dlewlqarGVHV 387 Rubrivivax gelat...
ZP_00765636 279 EEAAARGFLas-----kpLQGATILVSGYEGNEMLYAr--LLIEGGAHvPYVSTSIgpsaltaad---eawlkahgTQAV 348 Chloroflexus aur...
2AFK_B      421 YIGKDLWHLrsLVFtdkPDFMIGNSYGKFIQrdtlhkgkefevPLIRigfpifdr-hhlhrstTLGYEGAMQILTTLVNS 499 Azotobacter vine...
BAA96511    387 NFRASLEDDiaAVEefrPDLAIGTTPVVQHAkak-------aiPALYftnli-------sarpLMGPAGAGSLAQVINAA 452 Erythrobacter lo...
Q9F6X5      345 LVTDEFQVVadRIAalrPELVCGTQMERHTSrry-------dlNCMVisppthienhllayrpFLGFDGADVIADEVYTT 417 Chloroflexus aur...
NP_663025   352 MVTDKFQEVsaFIEeemPELVCGTQMERHSCrkl-------dvPCMVisapthienhllgyypFFGFDGADVMADRVYTS 424 Chlorobium tepid...
114855      333 LITDDYLEVekAIEaaaPELILGTQMERNIAkkl-------glPCAVisapvhvqdfparyapQMGFEGANVLFDTWVHP 405 Rhodobacter caps...
Q9JPA3      346 LITDDYLEVeaKVAelhPELVLGTQMERHIAkrl-------gvPCAVisapvhvqdfparyspQMGFEGANVLFDSWVHP 418 Rubrivivax gelat...
NP_874938   349 LITNDYLEVeeSIKecaPELVLGTQMERHSAkrl-------giPCAVistpmhvqdvparyspQMGWEGANVIFDDWVHP 421 Prochlorococcus ...
AAC84030    348 FVCDDFQEIshKIRdthPDIVLGTQMERHSAarf-------nfPCIVisspahilnfplfpapVLGYQGMTRMLDTINST 420 Heliobacillus mo...
BAA94036    388 QYRASLEQDiaAVRecrPDLAIGTTPVVQAAkqa-------tiPALYftnli-------sarpLMGPAGAGSLAQVINAA 453 Rubrivivax gelat...
ZP_00765636 349 IYRKTLEDDkaAMErwsFDLIIGTTTLAAYAkek-------giPAVYytnil-------svrpLFLAGGMIASLTFVRDL 414 Chloroflexus aur...
2AFK_B      500 IL 501 Azotobacter vinelandii
BAA96511    453 MA 454 Erythrobacter longus
Q9F6X5      418 CT 419 Chloroflexus aurantiacus
NP_663025   425 AK 426 Chlorobium tepidum TLS
114855      406 LV 407 Rhodobacter capsulatus
Q9JPA3      419 LM 420 Rubrivivax gelatinosus
NP_874938   422 LM 423 Prochlorococcus marinus subsp. marinus str. CCMP1375
AAC84030    421 IK 422 Heliobacillus mobilis
BAA94036    454 IA 455 Rubrivivax gelatinosus
ZP_00765636 415 LN 416 Chloroflexus aurantiacus J-10-fl
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