1GK8,1BXN


Conserved Protein Domain Family
RuBisCO_small_like

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cd00307: RuBisCO_small_like 
Click on image for an interactive view with Cn3D
Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome the low specificity of their Rubisco and fusions to Rubisco activase, a type of chaperone, which promotes and maintains the catalytic activity of Rubisco. CcmM contains an N-terminal carbonic anhydrase fused to four copies of the Rubisco-small subunit domain
Statistics
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PSSM-Id: 238187
Aligned: 20 rows
Threshold Bit Score: 108.516
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:putative multimerization interface [polypeptide binding site]
Evidence:
  • Comment:may not be present in cyanobacterial CcmM proteins
  • Comment:Rubisco small subunits contact two neighboring large catalytic subunit dimers each and other small subunits
  • Structure:1GK8; Chlamydomonas Rubisco

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #  #          #                           ## ##                          #
1GK8_I       23 DEQIAAQVDYIVANGWIPCLEFAEadkayvsnesairfgsvsclyydnRYWTMWKLPMFGc--RDPMQVLREIVACTKAF 100 Chlamydomonas re...
BAC08496    230 TTDYGTHVRQLLQQGYQISLEYADa----------------------rRYRTSSWQSGPTltgQQESQVMAAIAQLLKEH 287 Thermosynechococ...
YP_400440   456 SSDVAGQVRGLLAQGYRISAEVADk----------------------rRFQTSSWQSLPAlsgQSEATVLPALESILQEH 513 Synechococcus el...
ABC98646    324 NPDVQAQLRQILAQGYEILVEHADp----------------------rRYRVHSWQECGVahlREWAAACQAVEQCLSRF 381 Synechococcus sp...
NP_440093   244 NSDITNQIRSLLAQGYGIGAEHANe----------------------rRFKTKSWQSCGTadgFRPDQVIATVEGWLQEF 301 Synechocystis sp...
AAB66837    231 NGDLYNQVRGLAAQGCTFTAEYANk----------------------rRFKTKSWLSAGFvegHSADQIIGNLNRVLADH 288 Synechococcus sp...
ZP_00514298 345 GDDIASQVRALLHQGYKIGTEYANk----------------------rRFQTKSWKTGPSiqgNRESDVINQLQNILAEH 402 Crocosphaera wat...
NP_440093   362 AGDSANQLRALLHQGYKIGLEYASa----------------------rRFKTGSWLTGGTigsHREGEALQELNRFLADH 419 Synechocystis sp...
AAB66837    458 GGDVAGQIAALASQGCSFTAEHASt----------------------rRFKTQSWLGAGFvegHSANQILANIQAIAAQF 515 Synechococcus sp...
NP_681734   453 SADLVNQIQDLLRQGCQVITEYADq----------------------rRFRTSSWQSGIK---ITSAQQINDLRSFLAEH 507 Thermosynechococ...
Feature 1                     # ##        
1GK8_I      101 PDAYVRLVAFDNqkQVQIMGFLVQRP 126 Chlamydomonas reinhardtii
BAC08496    288 EGEYVRLIGVDPkaKRRVFEEIIQRP 313 Thermosynechococcus elongatus BP-1
YP_400440   514 KGKYVRLIGIDPaaRRRVAELLIQKP 539 Synechococcus elongatus PCC 7942
ABC98646    382 PKDYIRLVGVDPvkKQRRVEAIIHRP 407 Synechococcus sp. JA-3-3Ab
NP_440093   302 AGEYVRLIGIDQgaKRRVVEVIIQRP 327 Synechocystis sp. PCC 6803
AAB66837    289 AGEYVQLIAVAPnsKSRAAEIVVQRP 314 Synechococcus sp. PCC 7002
ZP_00514298 403 QQEYVRLIGVDPnaKRRVSESIIQRP 428 Crocosphaera watsonii WH 8501
NP_440093   420 TNEYVRIIGIDPagKRRVAEIVVHRP 445 Synechocystis sp. PCC 6803
AAB66837    516 PNEYVQLIAVDPnsKTRAAEIIIQRP 541 Synechococcus sp. PCC 7002
NP_681734   508 QRDYIRLVGVNPqaKQRVLETIIHRP 533 Thermosynechococcus elongatus BP-1

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