1YAZ,3KBE,1SRD,1TO4,1L3N,3L9Y,4OJA,1XSO,3CE1,6ZS1,3F7K,2E46,1F1A,1JK9,6FOL,2JLP,4U4I,7YPP


Conserved Protein Domain Family
Cu-Zn_SOD1-like

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cd00305: Cu-Zn_SOD1-like (This model is not part of the current CDD release)
copper/zinc superoxide dismutase SOD1 and similar proteins
This subfamily represents copper/zinc superoxide dismutase SOD1 and similar proteins. Superoxide dismutases catalyze the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene causes familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Mature SOD1 is a stable homodimer containing a catalytic Cu(II) ion and a Zn(II) ion with a structural role that increases enzyme stability. The presence of an invariant disulfide bond further stabilizes the protein. SOD1 is dependent on the copper chaperone for superoxide dismutase (CCS) for activity. It may function more than just as a reactive oxygen scavenging protein. In yeast, SOD1 functions in the glucose repression of cellular respiration; it interacts and stabilizes the membrane-bound casein kinase homologs, Yck1 and Yck2, which are involved in several nutrient-sensing pathways in the cell including glucose and amino acid sensing.
Statistics
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PSSM-Id: 502465
Aligned: 179 rows
Threshold Bit Score: 141.459
Created: 6-Mar-2002
Updated: 30-Oct-2024
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: active site [active site], 8 residue positions
Conserved feature residue pattern:[HNS] [HCQNVF] [HDR] [HDE] [HRK] [DS] [HC] RClick to see conserved feature residue pattern help
Evidence:
  • Structure:1YAZ: Yeast copper-zinc superoxide dismutase binds Cu and Zn in the active site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                           # #               #       #   
1YAZ_A          2 QAVAVLKGda------gvSGVVKFEQAsesepTTVSYEIAGnspnaERGFHIHEFGDATn-gCVSAGPHFNPfkKTHGap 74   baker's yeast
XP_055332027  276 QAVVIVTGpy------gvSGLVNLTQYspdapVELSGRIGGvr-pgDHGFHVHTFGDLSm-gCESAGSHFNPegNYHGsp 347  Paramacrobiot...
XP_040065942   60 RAVCHTPRvyspdspsnvSMTLFFVQEniehpVMINGEIVGlt-pgDHGLHVHSFGDLTn-gCTSTGTHFNPmhKHHGap 137  black-legged ...
XP_021944294   42 KAYVLFNIgvdk---sgiVGSLDLSQDepsspVKINGTLTGltpkgQHGFHVHESGDIRg-gCASTRGHFNPkmLTHGap 117  Folsomia candida
XP_046437978   47 SAVVDIKGttnf---pgvSGQIHFTQTttggpVIVRGTIQGlt-pgLHGLHIHQFGNLSd-nCNAAGPHFNPynKDHGgl 121  common water ...
XP_046453452   36 EAVVMMSSpsk-----dvVGFLALTQMky--gVKLVGWLMGlk-pgRHGMHVHTFGDVKtdgCTSTGFHYNPhnATHGgp 107  common water ...
AAF74772       41 DAVVNFVPgnd-----nvSGQLHLFKThy-ngVLLRGRVSGls-pgLHGFHVHAVGDLSg-kCTAAGGHFNPyqSTHGsp 112  blue crab
AAD25400       31 AAVVDLVPgsd-----qiSGRLEIYRSyn--gLTIVGTVSGlt-pgKHGFHVHQKGDLGd-gCKAAGGHFNPfnKNHGap 101  signal crayfish
XP_046446578   29 RAVVTISNge-------iNGKIVFEQAslkspVKIRGTIYGle-agLHGMHVHEGQQLGa-dCHQVGPHFNPtgKQHGgp 99   common water ...
XP_046446572   29 RALVTIEGmd-------iSGKLMVEQAsitspVKIRGVIYGle-pgRHGLHIHAGTTLGn-qCESVGPQFTPaeKYDSe- 98   common water ...
Feature 1                #  #                                         #                      #    
1YAZ_A         75 td--evrHVGDMGNVKTde---nGVAKGSFKDSLIkli--gptSVVGRSVVIHAGQDDLGkgdteeslKTGNAGPRPACG 147  baker's yeast
XP_055332027  348 ddahmqpHAGDLGNVRAne---yGEVIVTVSSPLIslypqspsFVIGRTLVIHEKPDDLGrggdqqsrETGNSGARIGCG 424  Paramacrobiot...
XP_040065942  138 ed--rerHVGDLGNINAdv---tGKARVYISDSMIslv--ghhDIIGRALVVHALPDDLGrggtdeskATGSSGSRLACC 210  black-legged ...
XP_021944294  118 gd--etrHVGDLGNIMAdd---kGVAVINITDRMIslt--gdnSVLGRAFIVHEKEDDLGkggddgskKTGNAGGRLACG 190  Folsomia candida
XP_046437978  122 dd--hvrHVGDLGNVDAmg---dSFADLFLFDHLIslspksdrSVLHRALVVHEKADDLGlgshadskKTGNSGSRVACG 196  common water ...
XP_046453452  108 ysatnmrHVGDLGNVVAne---qGIAVVNIFDRVIsli--gplSIDGRAIVVHAQEDDLT--------PKANPGSRVGCG 174  common water ...
AAF74772      113 ydptqerHAGDLGNIQAdq---yGNADVYIHDLVIslnpaspaYIGNLAIVVHQGQDDLGrggnadslKTGNAGGRAGCG 189  blue crab
AAD25400      102 ed--lerHAGDFGNVVAdy---qGVATIYIDDSQVsldpsseaYIGGLAIVVHAGVDDLGrggnpesaKTGNAGARSGCG 176  signal crayfish
XP_046446578  100 rd--anrHVGDLGNIKAipstpvSRSEISILSQVMslyedqpnSVLNRALVIHANVDDLGrgngpeslKSGNSGAHIACG 177  common water ...
XP_046446572   99 ------rSVSYIGNIKTysg-vpSRTDVSLISSLVslfeesprNILGRAVVIHQLPDDRAri-----sNAEAENRLVACG 166  common water ...
Feature 1             
1YAZ_A        148 VIGL 151  baker's yeast
XP_055332027  425 IIGF 428  Paramacrobiotus metropolitanus
XP_040065942  211 IVGF 214  black-legged tick
XP_021944294  191 IIGV 194  Folsomia candida
XP_046437978  197 IITL 200  common water flea
XP_046453452  175 TIVK 178  common water flea
AAF74772      190 LVVH 193  blue crab
AAD25400      177 IIRV 180  signal crayfish
XP_046446578  178 LISN 181  common water flea
XP_046446572  167 LLTT 170  common water flea

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