1BCC,1BGY,3BCC,1EZV


Conserved Protein Domain Family
Cytochrome_b_N

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cd00284: Cytochrome_b_N 
Click on image for an interactive view with Cn3D
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Statistics
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PSSM-Id: 238176
Aligned: 11 rows
Threshold Bit Score: 154.834
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 22 residues -Click on image for an interactive view with Cn3D
Feature 1:heme bL binding site [chemical binding site]
Evidence:
  • Structure:1BCC_C: binds heme bL
  • Comment:Nomenclature: b-type heme, low-potential

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                     #  ##  ## ##  #          #             #  ##  # 
1BCC_C     10 PLLKMINNSLIDlPAPSnisawWNFGSLLAVCLMTQILTGLLLAMHYTadTSLAFSSVAHTCRNVQYGWLIRNLHANGAS 89  chicken
1BGY_C      9 PLMKIVNNAFIDlPAPSnisswWNFGSLLGICLILQILTGLFLAMHYTsdTTTAFSSVTHICRDVNYGWIIRYMHANGAS 88  cow
3BCC_C     10 PLLKMINNSLIDlPAPSnisawWNFGSLLAVCLMTQILTGLLLAMHYTadTSLAFSSVAHTCRNVQYGWLIRNLHANGAS 89  chicken
461886     11 PIFSTFNNHLIDyPTPSnisywWGFGSLAGLCLVIQILTGVFLAMHYTphVDLAFLSVEHIMRDVKGGWLLRYMHANGAS 90  liverwort
NP_220656  21 LPIFSFLKHFSYyQTPKnlnylWNLGSIAGIALVIQIITGVILAMHYTphVDHAFESVERIMRNVNYGWLLRYTHAVGAS 100 Rickettsia prowazekii
1EZV_C      8 VYLSLVNSYIIDsPQPSsinywWNMGSLLGLCLVIQIVTGIFMAMHYSsnIELAFSSVEHIMRDVHNGYILRYLHANGAS 87  baker's yeast
Q57038     21 VQAISDDIASKYvPPHVni--fYCLGGLTLTCFLIQFATGFAMTFYYKptVTEAFASVQYIMNEVNFGWLIRSIHRWSAS 98  Synechocystis sp. ...
117820     14 IQAIADDITSKYvPPHVni--fYCLGGITLTCFLVQVATGFAMTFYYRptVTDAFASVQYIMTEVNFGWLIRSVHRWSAS 91  spinach
399321     14 IQAIADDVSSKYvPPHVni--fYCLGGITFTCFIIQVATGFAMTFYYRptVTEAFLSVKYIMNEVNFGWLIRSIHRWSAS 91  Euglena gracilis
1345901     1 MKLDFVNSMVVSlPSSKvltygWNFGSMLGMVLGFQILTGTFLAFYYSndGALAFLSVQYIMYEVNFGWIFRVLHFNGAS 80  pig roundworm
117895      3 YKSGEKRKGLLMsGCLYr---iYGVGFSLGFFIALQIICGVCLAWLFFscFICSNWYFVLFLWDFDLGFVIRSVHICFTS 79  Trypanosoma brucei...
Feature 1                                            ##  ## ##                                
1BCC_C     90 FFFICIFLHIGRGLYYGSY--LYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWG 167 chicken
1BGY_C     89 MFFICLYMHVGRGLYYGSY--TFLETWNIGVILLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWG 166 cow
3BCC_C     90 FFFICIFLHIGRGLYYGSY--LYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWG 167 chicken
461886     91 MFFIVVYLHFFRGLYYGSYasPRELVWCLGVVILLLMIVTAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWG 170 liverwort
NP_220656 101 MFFAAIYLHIARGLYYGSYktPRELLWHIGIIIFLIMMATAFMGYVLPWGQMSYWGATVITNLFSAIPLVGEPIVIWLWG 180 Rickettsia prowazekii
1EZV_C     88 FFFMVMFMHMAKGLYYGSYrsPRVTLWNVGVIIFTLTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIVSWLWG 167 baker's yeast
Q57038     99 MMVLMMILHVFRVYLTGGFkkPRELTWVVGVMLAVTTVTFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDQLVTLMRG 178 Synechocystis sp. ...
117820     92 MMVLMMILHVFRVYLTGGFkkPRELTWVTGVVLGVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRG 171 spinach
399321     92 MMVLMMILHVCRVYLTGGFkkPRELTWVTGIILAILTVSFGVTGYSLPWDQVGYWAVKIVTGVPEAIPLIGNFIVELLRG 171 Euglena gracilis
1345901    81 LFFIFLYLHLFKGLFFMSY--RLKKVWVSGIVILLLVMMEAFMGYVLVWAQMSFWASVVITSLLSVIPVWGFAIVTWIWS 158 pig roundworm
117895     80 LLYLLLYIHIFKSITLIILfdTHILVWFIGFILFVFIIIIAFIGYVLPCTMMSYWGLTVFSNIIATVPILGIWLCYWIWG 159 Trypanosoma brucei...
Feature 1                    # #  #                    
1BCC_C    168 GFSVDNPTLTRFFALH-FLLPFAIAGITIIHLTFLHESGSN 207 chicken
1BGY_C    167 GFSVDKATLTRFFAFH-FILPFIIMAIAMVHLLFLHETGSN 206 cow
3BCC_C    168 GFSVDNPTLTRFFALH-FLLPFAIAGITIIHLTFLHESGSN 207 chicken
461886    171 GFSVDNATLNRFFSLH-YLLPFIIAGASILHLAALHQYGSN 210 liverwort
NP_220656 181 GFSVDNPTLNRFFALH-YLFPFIIVVLVILHLVALHQHGSN 220 Rickettsia prowazekii
1EZV_C    168 GFSVSNPTIQRFFALH-YLVPFIIAAMVIMHLMALHIHGSS 207 baker's yeast
Q57038    179 SESVGQATLTRFYSLHtFVLPWAIAVLLLLHFLMIRKQGIS 219 Synechocystis sp. PCC 6803
117820    172 SASVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGIS 212 spinach
399321    172 SVSVGQSTLTRFYSLHtFVLPLLTATFMLGHFLMIRKQGIS 212 Euglena gracilis
1345901   159 GFTVSSATLKFFFVLH-FLVPWGLLLLVLLHLVFLHETGST 198 pig roundworm
117895    160 SEFINDFTLLKLHVLH-VLLPFILLIILILHLFCLHYFMSS 199 Trypanosoma brucei brucei

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