1DAB


Conserved Protein Domain Family
PL_Passenger_AT

?
cd00253: PL_Passenger_AT 
Click on image for an interactive view with Cn3D
Pertactin-like passenger domains (virulence factors) of autotransporter proteins of the type V secretion system. Autotransporters are proteins used by Gram-negative bacteria to transport proteins across their outer membranes. The C-terminal (beta) domain of autotransporters forms a pore in the outer membrane through which the N-terminal passenger domain is transported. Following transport, the passenger domain is generally cleaved by an outer membrane protease with the passenger domain either remaining in contact with the surface via a noncovalent interaction with the beta domain or cleaved to release a soluble protein. These proteins are highly diverse and perform a variety of functions that promote virulence, including catalyzing proteolysis, serving as an adhesin, mediating actin-promoted motility, or serving as a cytotoxin. Proteins in this family share similarity in the C-terminal region of the passenger domain as seen in the pertactin structure P.69, a Bordetella pertussis agglutinogen responsible for human pertussis. The P.69 protein consists of a 16-stranded parallel beta-helix with a V-shaped cross-section, and is one of the largest beta-helix known to date.
Links
?
Statistics
?
PSSM-Id: 238156
Aligned: 75 rows
Threshold Bit Score: 56.9901
Created: 5-Sep-2001
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
1DAB_A     351 LTLTggaDAQG--------------DIVAtelpsip-----gtsigplDVALas-qARWT-GATRAvd--sLSID-NATW 406  Bordetella pertu...
AAC44731   817 GYLSs--DIHAgtt---------aaTINLgdgdae-------tdsplfSSLIrgynAVLS-GNITGeq-stVNMN-NALW 875  Escherichia coli
AAK00464   876 AHASg--DIHAsa----------asTVTIgsdtpaelasaetaasafaGSLLegynAAFN-GAITGgr-adVSMH-NALW 940  Shigella flexner...
AAG30168   798 ASVTg--NIYAdd----------aaTITLgqpetetpt-issayqawaETLLygfdTAYR-GAITApk-atVSMN-NAIW 861  Escherichia coli
NP_708742  782 AWVNg--NIKSdk----------kaSILFgvdqykednldktthtplaTGLLggfdTSYT-GGIDApa-asASMY-NTLW 846  Shigella flexner...
AAL18821   862 AMFSg--EITAdda--------tavRVNLgsetstlse--fnpnpeltDLMFdkynTSWT-GKISAlk-gdASMV-NTVW 926  Escherichia coli
I54632     881 SMLSg--NINVqd----------kgTVTLggegelspd--ltlqnqmlYSLFngyrNIWS-GSLNApd-atVSMT-DTQW 943  Escherichia coli
CAC14221   676 GTLTd-vTLRGgn-----------tTLAStad-------------vagTIHSi--sGSAL-KVYQGahtaqADLNlAGRV 727  Yersinia pestis
AAC44081   188 LSVGnytEWANqvihhienyvsfaaHLYSgld-------------pfhYIEVtd-nSHVIgQTISLd---eFRLE-NSLW 249  Neisseria mening...
AAS67291   204 LAVGnytELMLaaqpsa---sswaeHLYSdp---------------glSLTVqd-nSHVIgQTIDLg---fLQLT-NSLW 260  Haemophilus infl...
1DAB_A     407 vm---------------------tDNSNV--GALRLasdGSVDFqqpaeagrfkVLTVn-TLAGs-GLFRMNVFAdl--g 459  Bordetella pertu...
AAC44731   876 ys---------------------dGNSTI--GTLKSt-gGRVELgggk---dfaTLRVk-ELNAnnATFLMHTNTs---- 923  Escherichia coli
AAK00464   941 tl---------------------gGDSAI--HSLTVr-nSRISSegdr---tfrTLTVn-KLDAtgSDFVLRTDLk---- 988  Shigella flexner...
AAG30168   862 hl---------------------nSQSSI--NRLETk-dSMVRFtgdn--gkftTLTVn-NLTIddSAFVLRANLa---- 910  Escherichia coli
NP_708742  847 rv---------------------nGQSAL--QSLKTr-dSLLLFsnien-sgfhTVTVn-TLDAtnTAVIMRADLsqsvn 900  Shigella flexner...
AAL18821   927 rm---------------------tGDSGL--NTLKTs-kSLTVFssdn---kfsTLTVn-DLTTsdSTFVLRSDSt---- 974  Escherichia coli
I54632     944 sm---------------------nGNSTA--GNMKLn-rTIVGFnggt--spftTLTTd-NLDAvqSAFVMRTDLn---- 992  Escherichia coli
CAC14221   728 vlfaddvapaaalpsravraadnrLSAPFtfRRVNMs-gGTLDLrnv----kkaQLVMd-SLAGn-GTFKLGSMLqq--d 798  Yersinia pestis
AAC44081   250 ep---------------------rWDSNV--GKLKTt-nADIRFntk-----seSLLVkeDYAGg-ARFRFAYDPke--a 297  Neisseria mening...
AAS67291   261 ep---------------------rWNSNI--DYLVTe-nAEIRFntk-----neSLLVegYYAGg-ARFRFAYDLkd-ka 309  Haemophilus infl...
1DAB_A     460 LSDKLVvm-qdASGQHRLWVRNSGSEPasa--ntLLLVQTpl-gSAATFTLAnkdgKVDIGTYRYRLAAng--------- 526  Bordetella pertu...
AAC44731   924 QADQLNvt-nkLLGSNNTVLVDFLNKPase--mnVTLITApk-gSDEKTFTAg---TQQIGFSNVTPVIstek----tdd 992  Escherichia coli
AAK00464   989 NADKINvt-ekATGSDNSLNVSFMNNPaqgqalnIPLVTApa-gTSAEMFKAg---TRVTGFSRVTPTLhvdt----sgg 1059 Shigella flexner...
AAG30168   911 QADQLVvn-ksLSGKNNLLLVDFIEKNgnsnglnIDLVSApk-gTAVDVFKAt---TRSIGFSDVTPVIeqkn----dtd 981  Escherichia coli
NP_708742  901 QSDKLIvk-nqLTGSNNSLSVDIQKVGnnnsglnVDLITApk-gSNKEIFKAs---TQAIGFSNISPVIstke----dqe 971  Shigella flexner...
AAL18821   975 GSDKVVvk-nkLEGKNNNLLVDYVANDgkhnslnLELVSApk-gTAADVFNSq---TQNVGFSDVTPVIeqkd----sge 1045 Escherichia coli
I54632     993 KADKLVin-ksATGHDNSIWVNFLKKPsnkdtldIPLVSApe-aTADNLFRAs---TRVVGFSDVTPILsvrk----edg 1063 Escherichia coli
CAC14221   799 ASAPVNvt-gnADGDFILQIDGSGIDPt-----nLNVVSTg--gGDARFTLTd--gPIGLGNRVYNLVKda--------- 859  Yersinia pestis
AAC44081   298 KNTALIfe-knVTGTSDIIFENPIDDLksl--dgHQIIKVngtaDKHAFRLSg---KHQKGIYTLSLQQrpegflpkckn 371  Neisseria mening...
AAS67291   310 PETPVLtfeqnITGTSDIIFENPIDDLksl--dgHQIVKVngtaDKNAFRLSg---KYRKGIYTLSLQQr---------- 374  Haemophilus infl...
1DAB_A     527 nGQWSLVGAKAPP 539  Bordetella pertussis
AAC44731   993 aTKWMLTGYQTVS 1005 Escherichia coli
AAK00464  1060 nTKWILDGFKAEA 1072 Shigella flexneri 2a
AAG30168   982 kATWTLIGYKSVA 994  Escherichia coli
NP_708742  972 hTTWTLTGYKVAE 984  Shigella flexneri 2a str. 301
AAL18821  1046 kTTWTLKGFNAVA 1058 Escherichia coli
I54632    1064 kKEWVLDGYQVAR 1076 Escherichia coli
CAC14221   860 sGKVTLVANESTV 872  Yersinia pestis
AAC44081   372 aMIWRFMHNRLKP 384  Neisseria meningitidis
AAS67291   375 -LEGFFTKLQERD 386  Haemophilus influenzae
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap