1D7B,1I82,2IVF,1ULV,1D7C


Conserved Protein Domain Family
DOMON_like

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cd00241: DOMON_like 
Click on image for an interactive view with Cn3D
Domon-like ligand-binding domains
DOMON-like domains can be found in all three kindgoms of life and are a diverse group of ligand binding domains that have been shown to interact with sugars and hemes. DOMON domains were initially thought to confer protein-protein interactions. They were subsequently found as a heme-binding motif in cellobiose dehydrogenase, an extracellular fungal oxidoreductase that degrades both lignin and cellulose, and in ethylbenzene dehydrogenase, an enzyme that aids in the anaerobic degradation of hydrocarbons. The domain interacts with sugars in the type 9 carbohydrate binding modules (CBM9), which are present in a variety of glycosyl hydrolases, and it can also be found at the N-terminus of sensor histidine kinases.
Statistics
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PSSM-Id: 187675
Aligned: 103 rows
Threshold Bit Score: 32.925
Created: 4-Sep-2001
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative ligand
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:Not all DOMON domains may bind a ligand at this consensus site
  • Structure:1I82: Thermotoga maritima xylanase 10A Family 9 carbohydrate-binding module binds a disaccharide, contacts at 4 A
  • Structure:1D7B: Phanerochaete chrysosporium Cellobiose dehydrogenase binds heme, contacts at 4 A
  • Structure:2IVF: Aromatoleum aromaticum Ethylbenzene dehydrogenase gamma subunit binds heme, contacts at 4 A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
1D7B_A        16 TGITdpv-----------hdVTYGFVFpplats----------gaqstEFIGEVVAPia--------------------- 53   Phanerochaete ...
1I82_A        24 EEIEtkavamg--sldknatAKVRVLWde------------------nYLYVLAIVKdpvlnkdn--------------- 68   Thermotoga mar...
EAK87204       9 TACLl--------------lLFFALAYaess--------------dqaSLYADTSCNsdlclrvvyspsekr---mnmtm 57   Ustilago maydi...
EDO54078      49 TIKAikpffapwdyledetvFRCFFSSqy------------------fYFSFNVADAtpimcrefv-------------- 96   Bacteroides un...
YP_131824     55 LTDFsfpwr-------tdsaPATEFKAlwdh--------------daiYFRYVLEDQhlaigtdp--------------- 98   Photobacterium...
ZP_02030400  747 VTGLiapwd------gaekdKTAFYAChdq---------------knlYFLYEVSDTtlvyndekt-------------- 791  Parabacteroide...
EFB02046      34 IDGVmapsew----ddaavfTGLQLTNdrgl--------------aneQTKFYMKWDkdfiyiaavcrds-------nvs 88   Victivallis va...
ACL23711      45 QYVVnapyfttt-nlserfsELAIFWFgrvsrsqnytdvrvgyndnelFLYLAVFDRqlwydttpaatdltawdaativi 123  Chloroflexus a...
EFB01187     416 AGMEllpag-------gaakETAEVKLwrdd--------------rnlYARFGLKAAdmakrsggta------------- 461  Victivallis va...
EFR56759      97 IPAKh---------------GDAWYYFyndgl------------rnqsVLYRTAQPGgegevfidp-------------- 135  Alistipes sp. ...
Feature 1                    #                    #                                              
1D7B_A        54 --------skWIGIALggam-------nndLLLVAWangnqiVSSTRwatgyvqp----------------taytgtaTL 102  Phanerochaete ...
1I82_A        69 ---snpweqdSVEIFIdennhktgyyedddAQFRVNym---nEQTFGtgg-------------------------spaRF 117  Thermotoga mar...
EAK87204      58 sangggapigWYAVGTg-------------KQMDGSn----mMIGWVdtagkvvmsqrtasghtspttsitaltatmePK 120  Ustilago maydi...
EDO54078      97 -qesdveaedRVEIFFsask-------dmgQYYCMEi----dPSGHVmdysasyyrk-----------fdyewnfkslEI 153  Bacteroides un...
YP_131824     99 --kraildsdRAEIFLakdp-------qltAYYTMEvd---lKARVFsakasydlvkkkr-----atldsswnwqglvTK 161  Photobacterium...
ZP_02030400  792 --easvgngdRIEFFMskdp-------emkTYYCAEi----dPKGKVmdyeahnyrkf---------dfnwnfkdlklAT 849  Parabacteroide...
EFB02046      89 gissklpyddCLEFFFmap--------gelDVVHWLvy---aTGGNTldfidseygsg----------yrgnpgriknEA 147  Victivallis va...
ACL23711     124 dtgsssqlsaTGYRFVaqlhgs---pefdaRYQASQr----aIDGSWrdsnvsftt-------------ipgwrgdrlND 183  Chloroflexus a...
EFB01187     462 etdgkvwrddCFELFLqpdr-------tgkAYFHWVg----nAAGTLydarcegfvr-----------dkswnsgatvEV 519  Victivallis va...
EFR56759     136 -ntlsedgtvALSGVTfskd-------gkyCAYSVAa----sGSDWVeirvmntadrtl--------tsdrinwvkfsGA 195  Alistipes sp. ...
Feature 1                                                                                  #     
1D7B_A       103 TTLpeTTIns--tHWKWVFRCQGctewnnggg-------------------------------idvtsqgvLAWAFSnva 149  Phanerochaete ...
1I82_A       118 KTA--VKLie--gGYIVEAAIKWktikpt------------------------------------pntvigFNIQVNdan 157  Thermotoga mar...
EAK87204     121 HSF--SNSsg--tVWTWSFPMSGsdatp--------------------------------------sastpFIWASNkad 158  Ustilago maydi...
EDO54078     154 CSI--KDEkgyivAGRLSVSELLelg------------------------------------------idlEEFYMGvfr 189  Bacteroides un...
YP_131824    162 ASI--TDNgy-ivEGKLPITTITelglw--------------------------------------qdeaqSELLCAlmr 200  Photobacterium...
ZP_02030400  850 SVG--KDSyr--vEGSISLKTLRklglis------------------------------------pegeirMGVYRAdyf 889  Parabacteroide...
EFB02046     148 KIN--RNDwt--iECRIPAESFFkeffdp-------------------------------------kysykFNVHRSfst 186  Victivallis va...
ACL23711     184 SND--EDRgw-amTFRIPFISLGlsgr----------------------------------------ppdgTRWRLGviv 220  Chloroflexus a...
EFB01187     520 AKQ--ADGws--aLLTVPFAALGgap------------------------------------------apdAVWGFNagr 553  Victivallis va...
EFR56759     196 EWAp-DSKgf--yYSAYDAPQKGvfssqnqfqkvyyhrlgtpqsadrliyadaehplryfspwpskdgqwlFIVASEgts 272  Alistipes sp. ...
Feature 1                                                                        
1D7B_A       150 vddpsd----------------------------------------------pqstfsehtDFG 167  Phanerochaete chrysosporium
1I82_A       158 ekg-----------------------------------------------------qrvgiISW 168  Thermotoga maritima
EAK87204     159 npsssttasikrhtafgsitldltkpysassssasssntgsntpvtpatgrgnasnqsqsnRVL 222  Ustilago maydis 521
EDO54078     190 adfttpntviwy----------------------------------ssvsinepkpdfhkpNIL 219  Bacteroides uniformis ATCC 8492
YP_131824    201 aeftplkdgnidmg------------------------------wmtwvdpktikpnfhnpDTF 234  Photobacterium profundum SS9
ZP_02030400  890 ddagerviwss------------------------------------wivpdaaepdfhipSSL 917  Parabacteroides merdae ATCC 43184
EFB02046     187 ngtvrpdgrpae-----------------------------------fssfshvrgqllkpHDF 215  Victivallis vadensis ATCC BAA-548
ACL23711     221 hdrddvvgqpi------------------------------------adqtwpptlnlnqpQTW 248  Chloroflexus aggregans DSM 9485
EFB01187     554 enpvtsevl-----------------------------------------srvpmvqfhqpERF 576  Victivallis vadensis ATCC BAA-548
EFR56759     273 -----------------------------------------------------------gtEVL 277  Alistipes sp. HGB5

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