1F3U


Conserved Protein Domain Family
TFIIFa

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cd00240: TFIIFa 
Click on image for an interactive view with Cn3D
Transcription initiation factor IIF, alpha subunit, N-terminal region of RAP74. Subunit of transcription initiation complex involved in initiation, elongation and promoter escape.Tetramer of 2 alpha and 2 beta TFIIF subunits interacts directly with RNA polymerase II. TFIIF inhibits non-specific transcription initiation by PolII and recruits the polymerase to the preinitiation complex on promoter DNA for site-specific transcription initiation. The PolII/TFIIF-complex attaches through direct interactions of TFIIF with promoter DNA, TFIIB and the TAF250 subunit of TFIID, and provides scaffolding for addition of TFIIE and TFIIH. Together with TFIIE, TFIIF participates in DNA strand separation (open complex formation). N-terminal domains of RAP30 and RAP74 co-fold to form a single core structure, a triple barrel heterodimer, and has pseudo-2-fold symmetry.
Links
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Statistics
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PSSM-Id: 238147
Aligned: 4 rows
Threshold Bit Score: 218.598
Created: 4-Sep-2001
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
transcription
Conserved site includes 49 residues -Click on image for an interactive view with Cn3D
Feature 1:transcription initiation complex contacts
Evidence:
  • Comment:"arm domain" involved in RAP30, TAF250, and DNA contacts; alpha 1 helix makes additional contacts to DNA.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                   ########              #########  #
1F3U_F     11 TEYVVRVPKnt-tkKYNIMAFNaadkvn---fatwnQARLERDLSnKKIYQEEEmp----------esGAGSEFNRKl-R 75  human
12644388   39 QEFKIRVPKmp--kKHHVMRFNatlnvd---faqwrNVKLERENNmKEFRGMEEdqp---------kfGAGSEYNRDq-R 103 fruit fly
1330397    14 SEFSVRVAKrsddiRYSVMMFNgmdkvdtskwtidsGVTMEREDNqRVILSTQTvq----------eyGEGSEYGKAa-R 82  Caenorhabditis ele...
5823572    21 YGSSCRHMTlc-lkCGRTMAQNkskch----ecgtvVTRLIREYNvRAAAPTDKnyfigrfvtglpnfKKGSENKWSlrK 95  thale cress
Feature 1     ############# ###                                                               
1F3U_F     76 EEARRKKYGIVLK-EFRpeDQPWLLRVNgk--sGRKFKGIKKGGvtenTSYYIFTQCp-DGAFEAFPVHNWYNFTPLARH 151 human
12644388  104 EEARRKKFGIIAR-KYRpeAQPWILKVGgk--tGKKFKGIREGGvgenAAFYVFTHAp-DGAIEAYPLTEWYNFQPIQRY 179 fruit fly
1330397    83 EEARRKKYGRQSK-KYRldNQPWKMAFTepegrQRQMRGIREGGanehADYWVFLKPnqSSEFKAYKVDEWHKFLPAITH 161 Caenorhabditis ele...
5823572    96 DIPQGRQFTDAQReKLK--NKPWILEDEt---gQFQYQGHLEGSq--sATYYLLVMQ--NKEFVAIPAGSWYNFNKVAQY 166 thale cress
Feature 1       ###############   
1F3U_F    152 RTLTAEEAEEEWERRNKVLN 171 human
12644388  180 KSLSAEEAEQEFGRRKKVMN 199 fruit fly
1330397   162 KTLDIDQAEEQFSQRYKVMN 181 Caenorhabditis elegans
5823572   167 KQLTLEEAEEKMKNRRKTAD 186 thale cress

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