3WMM,1AIG,1AIJ,1DXR,1EYS,2GNU,2PRC,1PRC,6Z5R,8B64,7DDQ,7OY8,7C9R,7XXF


Conserved Protein Domain Family
PRC_PRCH

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cd00226: PRC_PRCH (This model is not part of the current CDD release)
PRC-barrel domain found in photosynthetic reaction center (RC) complex, subunit H (PRCH)
Photosynthetic reaction center H (PRCH), also termed reaction center protein H chain, is a component of the reaction center (RC). RC is an integral membrane protein-pigment complex which catalyzes light-induced reduction of ubiquinone to ubiquinol, generating a transmembrane electrochemical gradient of protons used to produce ATP by ATP synthase. Subunit H is positioned mainly in the cytoplasm with one transmembrane alpha helix. It provides proton transfer pathway (water channels) connecting the terminal quinone electron acceptor of RC, to the aqueous phase. Members in this family are mainly found in photosynthetic bacteria: alpha, beta, and gamma proteobacteria.
Statistics
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PSSM-Id: 501554
Aligned: 21 rows
Threshold Bit Score: 326.191
Created: 4-Sep-2001
Updated: 30-Oct-2024
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 75 residues -Click on image for an interactive view with Cn3D
Feature 1:polypeptide substrate binding site [polypeptide binding site]
Evidence:
  • Comment:The light-harvesting core antenna (LH1) and the reaction centre (RC) of purple photosynthetic bacteria form a supramolecular complex (LH1-RC) to use sunlight energy in a highly efficient manner.
  • Structure:3WMM: Thermochromatium tepidum reaction center (RC) complex subunit H (PRCH) interacts with other subunits of RC, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         ######  ## #   #   ### ##  ########               #    # ####     #     #      
3WMM_H        10 DAAQITIWAFWLFFFGL-IIYLRREDKREGYPLDSDrtersggrvkvvGFPDLPDPKTFVLPhngGTVVAPRVEa----- 83  Thermochromatiu...
1EYS_H        10 DAAQITIWAFWLFFFGL-IIYLRREDKREGYPLDSNrtersggrykvvGFPDLPDPKTFVLPhngGTVVAPRVEa----- 83  Thermochromatiu...
6Z5R_H         8 DLAQVTLYVFWIFFAGL-LFYLRREDKREGYPLVADagsgt--rlakiGVPAPPDPKTYLLRg-gATKTVPSTSnd---- 79  Rhodopseudomona...
7OY8_H        11 DVAQVVLYAFWIFFAGL-IIYLRREDRREGYPLEDAisgkinslqglgSVFSIARPKIFKLKt-gATYAAPNFKrd---- 84  Rhodospirillum ...
7C9R_H        11 DLAQVTLWAFWLSLLSV-IFFNRREDKREGYPQEAVqifgk--tilteGFPFMPAPKTFKLPhngGDVVKPGPErp---- 83  Thiorhodovibrio...
7XXF_H        11 DAAQLVLYTFWLFFAGL-IIYLRMEDKREGYPLVTEipgk-----fleGFPPMPAPKTFILThnqGTVTVPRAVpr---a 81  Rhodopila globi...
AMS32291      10 DVAQIVLYVFWAFFAGL-IYYLHQEGKREGYPLHYDgnpn----ldvqGFPAIPSPKTFLLRd-gSTRTVPNGNtg---e 80  Betaproteobacte...
WP_039724487   9 DVALITFYVFVVFFIGL-VVYLQRESRREGFPLENDagek-----napSFIFTPGPKTFHMPhgrGTVEAPNQKvdsvaa 82  Lyngbya conferv...
WP_093418739  12 DGAMVAVIFFVIFFTWLvFFHLRREDRREGYPKDVDpdtkl--qtggtAILPMPRDKTFKRPhgrAPVSTPRREp----- 84  Tranquillimonas...
KPM25186      10 DVAILCVIAFVTFFVGL-VVYLRREDKREGYPVEVSgfmgr--thsaeGFPAVPRPKLFYRPhgrGVAQAPRVEe----- 81  Citromicrobium ...
Feature 1           #    # #  # ###          ### ### ##   # #  #   #        #####  ##            
3WMM_H        84 pVAVNATPFSPaPGSPLVPNGd-PMLSGFGPAASPDRPKHCDLTf-EGLPKIVPMRvAKEFSIAegDPDPRGMTVVGLDG 161 Thermochromatiu...
1EYS_H        84 pVAVNATPFSPaPGSPLVPNGd-PMLSGFGPAASPDRPKHCDLTf-EGLPKIVPMRvAKEFSIAegDPDPRGMTVVGLDG 161 Thermochromatiu...
6Z5R_H        80 rPNVALTPAAPwPGAPFVPTGn-PFADGVGPGSYAQRADVPELGl-DNLPIIVPLRaAKGMFLDprDPNPVGMPVVGCDG 157 Rhodopseudomona...
7OY8_H        85 aVAIKATRTAPtAGAPFEPTGn-PMTDAVGPAAYALRDELPDLTl-GGQPAIVPLRvAPTFSVAaeDTDPRGLPVVDRKG 162 Rhodospirillum ...
7C9R_H        84 qYDFKLEQVDRfAGAAYRPVGn-PMLAGVGPGAYAVRANKPDLTn-AGDPRIVPMRvAKHFAVVdkDPDPRGMTVIGADG 161 Thiorhodovibrio...
7XXF_H        82 eIEYKAEPCAAwPGAPHEPVGpnKMLSGAGPSGYALRFDTPEPTfdTGVPRMAPMRvATDHVFDedGPNPIGYDLVGFDG 161 Rhodopila globi...
AMS32291      81 vPDLKATSYGGyPGAPITPTGn-PMLDGVGPGAYAIRPDVPDMTv-DQQPKIVPLRvATNFHLEssDPNPIGMNVTAGDG 158 Betaproteobacte...
WP_039724487  83 aGNIKGEHMGF-EGTPWRPTSenPMLDGIGPGAWTERADVPDPLh-DGRPKIVPMRaDATVTIAegDVDPRGLRVVGCDS 160 Lyngbya conferv...
WP_093418739  85 rRPLADWPGYGrIGRPVHPVKd-GLTEGVGPAAWQEREDHPDLNv-EGKPKLISLNnAQEYHVApgDPDPRGWPVIGSDG 162 Tranquillimonas...
KPM25186      82 pETVRPGQTLPpMAFPLDPGPd-PLEEGIGAAAYTTLREDEPDLdvEGEPKLISLNdHPEYYIPngDPDPRGWVLVSADE 160 Citromicrobium ...
Feature 1                     ## ###                  # #  # #                               #  #
3WMM_H       162 EVAGTVSDVWVDRSEPQIRYLEVEVAa--nKKKVLLPIGFSRFDKk---aRKVKVDAIkAAHFANVPTLSNPdqVTLYEE 236 Thermochromatiu...
1EYS_H       162 EVAGTVSDVWVDRSEPQIRYLEVEVAa--nKKKVLLPIGFSRFDKk---aRKVKVDAIkAAHFANVPTLSNPdqVTLYEE 236 Thermochromatiu...
6Z5R_H       158 VVGGTVTEVWVDRAEVLARYLEVEVAk--sRKRVLLPVPFALINDp---fGKVSVDAIrGDQFAGVPTTSKGdqVSKLEE 232 Rhodopseudomona...
7OY8_H       163 AVAGKVTDLWIDRASIAIRYLEVELAat-pGRKVLLPFAATRINAkt-ksKTVTVQSIlARHFANVPTIAKTdsITRREE 240 Rhodospirillum ...
7C9R_H       162 QVGGKVTEIWVDRAEPQVRYLELEAGn---KKKVLVPIALCVIKGq---kREVKVRSInGIHFNDVPTLSNYdqITLAEE 235 Thiorhodovibrio...
7XXF_H       162 IVAGKITDAWVDREESLVRYLEAKLTn---DKSILVPMPLSRVKDs---tGQVLLASLkGEQVLEAPTLANPdqVTLREE 235 Rhodopila globi...
AMS32291     159 NVAGQITDVWVDRAEILIRYLEVKVAs--nGRTVLIPHNFARITS-----KGVKVKSIfAEHFADVPGTKNPesVTLMEE 231 Betaproteobacte...
WP_039724487 161 IVAGRVKDVWVDRMEHMARFLEIETEvgeaPRSVLVPMNFCVVKTprdreKVFYVHAItGEQFAMVPGTRKDdeITLLEE 240 Lyngbya conferv...
WP_093418739 163 KPGGDVVDIWFNRAEFFLRYFEVRLPe--sSGTVLLPVFFTDIQSq---rRRVRARTIpGRRLRDAPRRKREdqITLLEE 237 Tranquillimonas...
KPM25186     161 KVVGKVHDLWFNRAEFFLRYFEVSIDg--aEGRRLIPSFFAEALPr---dSAVRATTLiARDLRRAPIRADDscITMREE 235 Citromicrobium ...
Feature 1        #  ##  #  ### 
3WMM_H       237 DKVCAYYAGGKLYA 250 Thermochromatium tepidum
1EYS_H       237 DKVCAYYAGGKLYA 250 Thermochromatium tepidum
6Z5R_H       233 DKICAYYGAGTLYA 246 Rhodopseudomonas palustris CGA009
7OY8_H       241 DKVMAYYSSGYLYS 254 Rhodospirillum rubrum ATCC 11170
7C9R_H       236 DKVSAYYGAGTLYA 249 Thiorhodovibrio frisius
7XXF_H       236 DRIAAYFASGHLYA 249 Rhodopila globiformis
AMS32291     232 ERIMAYYGAGTLYA 245 Betaproteobacteria bacterium UKL13-2
WP_039724487 241 EKIMAYYGAGLLYA 254 Lyngbya confervoides
WP_093418739 238 DKINAFYAGGRFYG 251 Tranquillimonas alkanivorans
KPM25186     236 DRLNGFFAGGLRFS 249 Citromicrobium sp. RCC1885

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