1D2P,1D2P,1D2P,1D2P


Conserved Protein Domain Family
CollagenBindB

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cd00222: CollagenBindB 
Click on image for an interactive view with Cn3D
Repeat unit of collagen-binding protein domain B
The collagen-binding protein mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by instances of this B region repetitive unit. The B region has one to four 23 kDa repeat units (B1-B4), which have been suggested to serve as 'stalks' that project the A region from the bacterial surface and thus facilitate bacterial adherence to collagen. Each B repeat unit has two highly similar domains (D1 and D2) placed side-by-side; both D1 and D2 are included in this model. They exhibit a unique inverse IgG-like domain fold.
Statistics
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PSSM-Id: 212461
Aligned: 121 rows
Threshold Bit Score: 53.8368
Created: 4-Sep-2001
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
domain
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:domain interaction interfaces [polypeptide binding site]
Evidence:
  • Comment:D1 interacts with D2 via hydrogen bonds and hydrophobic interactions
  • Structure:1D2P_A; D1/D2 domain interaction
  • Comment:AB loop of D2 interacts with DE loop of D3
  • Structure:1D2P_A; D2/D3 domain interaction

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          # # #                                 ##                # # #                  
1D2P_A        190 TSSIGEKVWDDKdn-qDGKRPEkVSVNLL---------ANGEk-VKTLDVTSet-nWKYEFKDLPKYD-------EGKKI 250  Staphylococcu...
1D2P_A          3 TSSIGEKVWDDKdn-qDGKRPEkVSVNLL---------ANGEk-VKTLDVTSet-nWKYEFKDLPKYD-------EGKKI 63   Staphylococcu...
1D2P_A         93 TSATVTKNWDDNnn-qDGKRPTeIKVELY---------QDGKatGKTAILNEsn-nWTHTWTGLDEKA-------KGQQV 154  Staphylococcu...
1D2P_A        280 TSATVTKNWDDNnn-qDGKRPTeIKVELY---------QDGKatGKTAILNEsn-nWTHTWTGLDEKA-------KGQQV 341  Staphylococcu...
YP_004709754  770 INIKGHKIWEDFnn-aDGKRPGhVVVELYqkdpttvegQDNPvkYGEYTTSVan-gWEYHFDLLPKFVkdaqgkdTATAY 847  Eggerthella s...
YP_002559767  169 TQLSGKIQYKDVp---DKVTPTaLEVELIn-------kQHQT--VVDRTVVNpn-dLEYTFDQLNKFNi------DNQLI 229  Macrococcus c...
YP_001691143 1245 IDFKGTKKWFDDn---DKVRPKeIKLNLY---------ANDKl-VKTQNIRGtgnnWEYEFKDLFKYE-------NGKLI 1304 Finegoldia ma...
YP_004726212  731 TKIQGKKIWQDDnd-hDKFRPKeIILELM---------QANNv-VATQIVTKqt-qWQYVFKKLPKYQ-------NGVKL 791  Weissella kor...
YP_004709754 1816 ITIVGEKKWVGDv---PDDRPAsVLLKLY---------RDGEe-YDTATATAee-gWKFAFENLPKLKrg----sLDEES 1877 Eggerthella s...
YP_004709754 1092 ITISGEKLWKGDskvaAQERPGsVKLVLY---------RDGVe-YSHTTVTAag-gWKYSFKNLPKHKeg----nLKEVS 1156 Eggerthella s...
Feature 1         # # #   #     # ##                          
1D2P_A        251 EYTVTED-HVKD-YTTDING-----------------TTITNKY 275  Staphylococcus aureus
1D2P_A         64 EYTVTED-HVKD-YTTDING-----------------TTITNKY 88   Staphylococcus aureus
1D2P_A        155 KYTVEELtKVKG-YTTHVDNndm------------gnLITTNKY 185  Staphylococcus aureus
1D2P_A        342 KYTVEELtKVKG-YTTHVDNndm------------gnLITTNKY 372  Staphylococcus aureus
YP_004709754  848 IYTLKEV-AVDG-YVTNVDTvdtssvs----dkqdatADITNTF 885  Eggerthella sp. YY7918
YP_002559767  230 EYEVRPK-ATGN-YKVDVKAndill-------qylstKIEGNIR 264  Macrococcus caseolyticus JCSC5402
YP_001691143 1305 DYKVKEE-VTDKaYYQVVKD-----------------NVIENHY 1330 Finegoldia magna ATCC 29328
YP_004726212  792 NYQVREK-PVEY-YQIKYKN-----------------NDIYNTL 816  Weissella koreensis KACC 15510
YP_004709754 1878 VYTLKEV-EVAG-YKAALPIlslqgve----dgqtvvADVTNTK 1915 Eggerthella sp. YY7918
YP_004709754 1157 TYTIGEE-AAAG-YTSNLPLitvsevenaqhgdiignKNITNVF 1198 Eggerthella sp. YY7918

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