1TVX,1HRJ,1CM9,1J8I,1MGS,1MI2,1PLF,1F2L,1B2T,1DOL,1NCV,1EOT,2HCC,1SDF,1HA6,1ILP


Conserved Protein Domain Family
Chemokine

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cd00169: Chemokine 
Click on image for an interactive view with Cn3D
Chemokine: small cytokines, including a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity; distinguished from other cytokines by their receptors, which are G-protein coupled receptors; divided into 4 subfamilies based on the arrangement of the two N-terminal cysteines; some members can bind multiple receptors and many chemokine receptors can bind more than one chemokine; this redundancy allows precise control in stimulating the immune system and in contributing to the homeostasis of a cell; when expressed inappropriately, chemokines play a role in autoimmune diseases, vascular irregularities, graft rejection, neoplasia, and allergies; exist as monomers, dimers and multimers, but are believed to function as monomers; found only in vertebrates and a few viruses. See CDs: Chemokine_CXC (cd00273), Chemokine_CC (cd00272), Chemokine_C (cd00271), and Chemokine_CX3C (cd00274) for chemokine subgroups.
Statistics
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PSSM-Id: 238098
Aligned: 22 rows
Threshold Bit Score: 47.3326
Created: 1-Nov-2000
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 21 residues -Click on image for an interactive view with Cn3D
Feature 1:putative receptor binding site
Evidence:
  • Comment:The N-terminus, N-loop, 30s-loop, and residues next to the disulfides and in the alpha helix are thought to be involved in receptor binding for the family in general

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1    #####    ######                                   ##########
1TVX_A    11 LCIKTts-gIHPKNIQSLEVIgkgthcnQVEVIATLk-DGRKICLDPDAPRIKKIVQKKL 68  human
1MGS_A    10 QCLQTlq-gIHPKNIQSVNVKspgphcaQTEVIATLk-NGRKACLNPASPIVKKIIEKML 67  human
1MI2_A    10 QCLKTlp-rVDFKNIQSLSVTppgphcaQTEVIATLk-GGQKVCLDPEAPLVQKIIQKIL 67  house mouse
1PLF_A    13 VCLKTts-gINPRHISSLEVIgaglhcpSPQLIATLk-TGRKICLDQQNPLYKKIIKRLL 70  cow
1F2L_A    11 TCSKMts-kIPVALLIHYQQNqas--cgKRAIILETr-QHRLFCADPKEQWVKDAMQHLD 66  human
1DOL      12 CCYNFtnrkISVQRLASYRRItss-kcpKEAVIFKTi-VAKEICADPKQKWVQDSMDHLD 69  human
1NCV_A    11 CCYRFinkkIPKQRLESYRRTtss-hcpREAVIFKTk-LDKEICADPTQKWVQDFMKHLD 68  human
1EOT       9 CCFNLanrkIPLQRLESYRRItsg-kcpQKAVIFKTk-LAKDICADPKKKWVQDSMKYLD 66  human
1SDF      10 PCRFFes-hVARANVKHLKILntp--ncALQIVARLknNNRQVCIDPKLKWIQEYLEKAL 66  human
1ILP_A     8 QCIKTyskpFHPKFIKELRVIesgphcaNTEIIVKLs-DGRELCLDPKENWVQRVVEKFL 66  human

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