1I82


Conserved Protein Domain Family
CBM9_like_1

?
cd00005: CBM9_like_1 
Click on image for an interactive view with Cn3D
DOMON-like type 9 carbohydrate binding module of xylanases
Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. The CBM9 domain frequently occurs in tandem repeats; members found in this subfamily typically co-occur with glycosyl hydrolase family 10 domains and are annotated as endo-1,4-beta-xylanases. CBM9 from Thermotoga maritima xylanase 10A is reported to have specificity for polysaccharide reducing ends.
Statistics
?
PSSM-Id: 187674
Aligned: 29 rows
Threshold Bit Score: 232.126
Created: 4-Sep-2001
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
carbohydrateCa binding site
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:carbohydrate binding site [chemical binding site]
Evidence:
  • Structure:1I82: Thermotoga maritima xylanase 10 a binds cellobiose, contacts at 4 A

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                  #     #
1I82_A          2 VATAKY--GTPVIDGEIDEIWNTTEEIETKAVAMGsldknATAKVRVLWDE-NYLYVLAIVKDPvLNKdnsNPWEQDSVE 78   Thermotoga ma...
974180        643 EINIKK--GSATVDGDIEEAWDAAEAVSLSIKLGSd----ISADGKLLWDE-ENLYVLVDVKDSvLNEdseDDYQQDSVE 715  Eubacterium r...
ZP_04743263   903 VEKAAY--GTVTVDGDKDAVWDNAGTIPITINLGSn----VSANAKLLWDK-DNFYVYAEIKDPvLNNtngDAWEQDSLE 975  Roseburia int...
CAA90745      881 AAVQAS--TAPVIDGVVDEAWADAPVLTTDVQVEGtp--gATAEIRVLWHD-DAVDVLATVADPvVDEtatNAWEQDSVE 955  Cellulomonas ...
EES73098       74 RMVAKF--GSPVIDGNVDKVWSKAQPVSPQHVSGEv---eASAVLRALWDD-QALYVLAEVKDPhLSVasvNPYMQDSLE 147  Paenibacillus...
5880612       877 DVVEAA--QAPEIDGQVDDAWADAEVVSTGKTVEGga-dgATAQVRTLWSGdDTLYVLAEVTDPvVDVssaDPWNQDSVE 953  Cellulomonas ...
YP_003161599  865 YTTAIEadTAPQIDGVMDDVFADAQSITTGKQVSGtd--gATADTRAVWNG-STLYLFAEITDPdVDVtsaSPWEQDSVE 941  Jonesia denit...
ACL77751      146 RMVAYF--GSPVIDGKVDAAWSKAQVVTPKYVTDNi---gTTATFRTLWDD-NAIYILAEVKDKnMSVesdTPYMQDSLE 219  Clostridium c...
ADG73551      855 VAQAQD--GAPEVDGEVDEVWEGAGGVVTAKQVSGtg--tATAQVRTLWEG-DDLYVLMEVTDPvIDLspsSPWEKDSVE 929  Cellulomonas ...
EEU60997      221 VVAYYG--SPDSIDGDIEDAWKLAEPVKFTKISSGst--dTTATIKVMWDD-KAVYFLAEVKDAnVSDasgNVYEKDSVE 295  Clostridium p...
Feature 1                           # #                                                           
1I82_A         79 IFIDENNHKTgyYEDDDAQFRVNYmNEQTFGtgg---spARFKTAVKLiegGYIVEAAIKWk-------tIKPt-PNTVI 147  Thermotoga ma...
974180        716 IFVDENNGKSggYEADDKQYRISFsNKQSFNgek--cvaENITSATKKtddGYVVEAAIKWt-------dITPe-VGGKA 785  Eubacterium r...
ZP_04743263   976 VFIDENNGKSnsYEYDDKQYRISYaNDHSFNgkk--cleENMKSVAKItsdGYVVEASFKWt-------dITPk-AGDEI 1045 Roseburia int...
CAA90745      956 IFVDPVNAKAgaYTPQDGQYRISAsNAQSVSgdla-vigERLTSATALvdgGYVVEASIALg--------RDVt-VGDLV 1025 Cellulomonas ...
EES73098      148 LFLDENHDKTleYGVDDVHFRVNYeNNQSVDng----dvQRFYTAAKRvdgGYVIEARIALk--------SKPe-NNKVV 214  Paenibacillus...
5880612       954 LFLDLGNTKPaaYGPNVSQMRISAdNVTSFGtgdaaaqaARLTSATARtdtGYVVELAVTLrgqsggqddVALggADTFQ 1033 Cellulomonas ...
YP_003161599  942 IYVDMGNAKNgsYRDLDTQIRISAqNVVSFGtgdeamqeARITSATAAtdtGYIVEVAIDLg--------DEGg-AGTFQ 1012 Jonesia denit...
ACL77751      220 IFLDENNDKTqeYGIDDLHFRVNYkNSQSVDvg----naERFYTSTKKvkgGYLVEARVALn--------AKPs-DGKVL 286  Clostridium c...
ADG73551      930 IYVDAGNNKNggYLPTDAQLRVDAdNVVTAGnaa---qvELITSATSRtadGYLVEARISLq--------GLGg-AETVH 997  Cellulomonas ...
EEU60997      296 FFLDQDNKRIgtYEGDDSQFRINFkNERSTDhg----dlTNLYSAAKKvagGYVIEGRVALs--------EIPa-NGKVM 362  Clostridium p...
Feature 1             #                    #  #            
1I82_A        148 GFNIQVNDANEkgqRVGIISWSDPTNNSWRdpsKFGNLRLI 188  Thermotoga maritima
974180        786 GVELQVNDATAegvRCGTISWADDTGTGYMspeVFGTVVFE 826  Eubacterium ruminantium
ZP_04743263  1046 GLEFQINDADAsgkRIGTLSWNDETGMGWSkpeVFGTVKLG 1086 Roseburia intestinalis L1-82
CAA90745     1026 GLDFQVNDATAg-vRGSVRTWTDPTGRSYQstaRWGVAELV 1065 Cellulomonas fimi
EES73098      215 GFELQINDAKGs-tRAGTLNVFDATGNAWNdtgKFGELVLN 254  Paenibacillus sp. D14
5880612      1034 GLDVQVNDGRDg-aRYAVHTWADPTGTGYQtgaRWGVAHLV 1073 Cellulomonas pachnodae
YP_003161599 1013 GFDFQVNDASDg-aRASITNWADPTGAGYQstaRWGVIELL 1052 Jonesia denitrificans DSM 20603
ACL77751      287 GIELQINEAKDt-eRIGTINIFDSTGSAWNdtnKFGEVLLT 326  Clostridium cellulolyticum H10
ADG73551      998 GLDFQVNDASGg-sRIGITNWADPTGQGYQstnHWGVGRLV 1037 Cellulomonas flavigena DSM 20109
EEU60997      363 GIEGQINDATGn-kRIATMNIFDSTGTAYQdtkKFGQMLLT 402  Clostridium papyrosolvens DSM 2782

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap