Conserved Protein Domain Family
RNAP_delt_lowGC
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TIGR04567: RNAP_delt_lowGC 
DNA-directed RNA polymerase delta subunit
Members of this family are the RNA polymerase delta subunit, as found in the Firmicutes and the Mollicutes. All members of the seed alignment have an extended C-terminal low-complexity region, consisting largely of Asp and Glu, that is not included in the model. Proteins giving borderline scores should be checked to confirm a similar acidic C-terminal domain. [Transcription, DNA-dependent RNA polymerase]
Links
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Statistics
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PSSM-Id: 275360
Aligned: 72 rows
Threshold Bit Score: 64.5157
Created: 10-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
ZP_07832543    1 MKKSMVDVAYDLMSTK--K-K--AIVFLKLWEEV-CQVMAFTKQQEEDNIAQFYSDLSLDDRFVNVGENKWDLRERHTYH 74  Clostridium sp....
ZP_07954410   13 KAMSLVDLCYVYMVEE--NiE--KLNIYDFLDYI-KPLRGVDEEEFSSQAAYFYTDLNLDGRFICVEDGSWKLRDSLFVE 87  Gemella morbill...
ZP_08554696    7 DNKSMIEVAELLMQRK--K-T--PQKFDKIAQEV-SELMGLSSEEFVARKSRLYADITLSGKFVSVGSGTWDLKNRQKFE 80  Haloplasma cont...
ZP_08915731    1 MERHLIDTAYDCAKKN--F-GesPFTFKELYELL---LK--SNPLIKNEAIDLYIEILQDIRFISLGKQKWSLRENYTNA 72  Mycoplasma iowa...
WP_010874381   6 EYLDLISQAKEIAETQ--F-KaePFSFDAIWKEV-VKHFKISKQDEPNLISRFYQDFLEDPNFVYLGERNWKLRDFMKFD 81  Mycoplasma pneu...
WP_012243321   7 NELSLLDTITYILKEN--K-E--PMSIYDLIEAT-AKQSGMDIEDV-DAMTQLYMDITLSGKFVFVGDDKWTLKDGH-LE 78  Acholeplasma la...
WP_011183545   5 ESLSNIDLAYELLRKR--K-S--PMKLMAIWESI-KDKAINHKNDENEAIADLYSDLVLDVRFALSTKGEWALSDDSKIE 78  Mesoplasma florum
WP_011077848   1 MAKHLIETTYEYAKDKfgK-T--PFTFKELFNNL-LK----NDPSIKESASDLYIELLQDIRFISLGNQKWSLREYFTLS 72  Mycoplasma pene...
WP_015726069  14 hvsqLVEFAYTVAKEQ--F-KgdFFSFHSLWSKTwKGASAFSKEKVENWIGFFYAEILLDPRFVAFNFNKWKLKEFMSFE 90  Mycoplasma haem...
WP_012504204   5 KHKNHLELAEEILKKN--K-F--SMTINDLINQI-CVINKIDSKDY-EKISQLYLDITLSSKFIFCGEELWTLKEN-NLK 76  Candidatus Phyt...

ZP_07832543   75 EVVVDTEEI 83  Clostridium sp. HGF2
ZP_07954410   88 DIKTFVEPS 96  Gemella morbillorum M424
ZP_08554696   81 LGDYHLAIE 89  Haloplasma contractile SSD-17B
ZP_08915731   73 EINKITSSM 81  Mycoplasma iowae 695
WP_010874381  82 EWNKISQAM 90  Mycoplasma pneumoniae
WP_012243321  79 YWDKDgyaf 87  Acholeplasma laidlawii
WP_011183545  79 DIKKKFDPk 87  Mesoplasma florum
WP_011077848  73 EINKITSSM 81  Mycoplasma penetrans
WP_015726069  91 DIKKlettv 99  Mycoplasma haemofelis
WP_012504204  77 LWDKDCffn 85  Candidatus Phytoplasma mali
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