Conserved Protein Domain Family
SoxH_rel_PQQ_2

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TIGR04559: SoxH_rel_PQQ_2 
quinoprotein relay system zinc metallohydrolase 2
By homology, members are Zn metallohydrolases in the same family as the SoxH protein associated with sulfate metabolism, Bacillus cereus beta-lactamase II (see PDB:1bc2), and, more distantly, hydroxyacylglutathione hydrolase (glyoxalase II). All members occur in genomes with both PQQ biosynthesis and a PQQ-dependent (quinoprotein) dehydrogenase that has a motif of two consecutive Cys residues (see TIGR03075). The Cys-Cys motif is associated with electron transfer by specialized cytochromes such as c551. All these genomes also include a fusion protein (TIGR04557) whose domains resemble SoxY and SoxZ from thiosulfate oxidation. A conserved Cys in this fusion protein aligns to the Cys residue in SoxY that carries sulfur cycle intermediates. In many genomes, the genes for PQQ biosynthesis enzymes, PQQ-dependent enzymes, their associated cytochromes, and members of this family are clustered. Note that one to three closely related Zn metallohydrolases may occur; this family represents a specific clade among them. Some members of this family have a short additional N-terminal domain with four conserved Cys residues. [Unknown function, Enzymes of unknown specificity]
Statistics
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PSSM-Id: 275352
Aligned: 34 rows
Threshold Bit Score: 397.723
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ZP_08535905   28 DYRLKQVSDGIFYHQGAQEDANQHNKGEIANTGFIVGDKCIAVVDSGGSYLEGKALFEAIRVKSDLPICYVINTHAHPDH 107 Methylophaga am...
ZP_08486382   31 VLSVTQVAPGIYVHLGPHEIPDTRNHGAIANIGFIVGERCVAVIDTGGNPDQGRALLNAVRHHTDKPICYVINTHVHPDH 110 Methylomicrobiu...
ZP_08781666   21 TLPVKEITAGVYVHFGKHQFPDSKNHGEIANLGFIVGQKCVAVIDSGGNPEQGSALKQAVTETTNTPICYVINTHVHPDH 100 Methylobacter t...
ZP_05104328   26 DYSVQKVTDGVFYHQGVHEDATPENIGAIANVGFIIGEDCVAVVDSGGSFAEGQQLKQALKRQTNKPVCFVINTHVHPDH 105 Methylophaga th...
ZP_01551621   23 DLNFIEIQPGMFVHQGSHVDVDVGYQGDICNIGFIIGKEAVAVIDTGGSEIIGKSMLDEIKKRTGLPIRYVINTHVHLDH 102 Methylophilales...
WP_010959662  65 DLELREIAPGIFVHQGRHELPDTHNRGEIANIGFIVGERCVAVIDSGGSPEQGRALKAAIAVHTPLPVCYVINTHVHPDH 144 Methylococcus c...
WP_011480526  31 ALSVQQVAPGVYMHQGAHLDLDDGYQGDISNIGFIIGAKGVAVIDTGGSRQVGEALLSAIREITDLPVLYVINTHIHPDH 110 Methylobacillus...
WP_015830873  21 ALTLTEISPGVYVHQGVHEDLSEGYHGDICNISVVIGKNGVAVIDTGGNLKVGQALHEAIRQLTPLPILYVINTHVHPDH 100 Methylovorus gl...
WP_013820482  21 ALQVTEAAPGVFVHVSEHHWPDRKNHGEIANIGFIVGDDCVAIIDSGGSPQQGLALRKAVKNATPKPVCYVINTHVHPDH 100 Methylomonas me...
WP_013149419  25 SFAIESLGDGIYVHHGVHLDIDDGYQGDICNASFIVGSKGVAVIDTGGSFKVGKQLREAIRKITPLPVIYVINTHVHPDH 104 Methylotenera v...
ZP_08535905  108 FLGNAAFKDTGATFIGNDKMPAAIESRKAFYETRFSDIlgeYYKGTEFIEPTRLVsvDKPLTIDLGGRELVLNSYPTSHT 187 Methylophaga am...
ZP_08486382  111 IYGNSVFKANGVKFVGHSLLGRAMAARGPFYLAKAKELlgiDLTSGNLIPPDIAV--EKELDVDLGGRILKLTAHQPAHT 188 Methylomicrobiu...
ZP_08781666  101 INGNSAFKAAGVKFVGHHKLAGAMAARGSYYLDKAADQlsvKMNAADLIPPDIEV--KDSLKLDLGGRTLILKAHPTAHT 178 Methylobacter t...
ZP_05104328  106 VLGNAAFTEFNPIYIGHEKLPAAMDSRKDFFDRVFSESlgaAYIGSEFITPTQTVsiGSPITIDLGNRELELTAYTTSHT 185 Methylophaga th...
ZP_01551621  103 IYGNAAFLDTKPIFIGHKELPKAMRLRKEFYEQTNLKYleiPPEDSIQVPPTMLVepNRIQEIDLGDRVLKLEAYPVAHT 182 Methylophilales...
WP_010959662 145 IYGNRAFKAPGVSFIGHHKLAQAMALRAPYYIDKAARDlgyTLTAEDFVPPDQPV--EESMELDLGNRTLRLTAHGPAHT 222 Methylococcus c...
WP_011480526 111 IFGNAAFKQEHPVFIGHAKLPNAMALRGEAYLRQGQKLlgiQFSESEIIPPTQLV--ASFQELDIGGRKLLLTAYPNAHT 188 Methylobacillus...
WP_015830873 101 VFGNAAFIADHPQFIGHAKLADALERRRDSYLRSNQQWqgqDFAGSEIIKPTLAV--SDALEIDLGGRQLALKAYPPAHT 178 Methylovorus gl...
WP_013820482 101 IYGNRAFKEKGVRFVGHYKLARAMATRAPHYLGKADELldiRVSPENIIPPDIQV--KQTLKLNLGNRELVLTAHPSAHT 178 Methylomonas me...
WP_013149419 105 IYGNAAFLNDKPQFIGHDKLANAMELRHEAYAKLNARLlgaDAQASELVKPTMTV--KTTLELDLGDRKLTLTAHPVAHT 182 Methylotenera v...
ZP_08535905  188 DNDLTVLDKNTKTLWTGDLLFVKRIPALDGSINGWLATIEKLKAM-QLNAVIPGHGPAQYQdwQHAFDVEEHYFSTIRQQ 266 Methylophaga am...
ZP_08486382  189 DSDLSIYDPLTDTLWLADLLFLEHLPVIDGSLKGWLAEIDRLERR-NYKVVIPGHGSIVTDw-PQSLQPEKRYLQTLLTD 266 Methylomicrobiu...
ZP_08781666  179 DNDLSVYDEKTNTIWLSDLLFTEHVPTLDGSLKGWLAEIDKLEKQ-SFRYVVPGHGELVTDw-PQSMQAQKHYLTLLLTE 256 Methylobacter t...
ZP_05104328  186 DHDLTVFDKSSKTLWTGDLLFIDRIPALDGSINGWIENLTQLKNK-DIEYAVPGHGPAGKDsyQVGLSEHLNYLVTIREQ 264 Methylophaga th...
ZP_01551621  183 NTDLTVHDIKTDTLWTGDLVFIERVPVIDGNIQGFINALEKLKKR-NHKMIVPGHGKPTKDs-MLAIKNVQKYLEILRDE 260 Methylophilales...
WP_010959662 223 DNDLSVYDAKTATLWAADLLFMGHLPVVDGSLTGWLKEIDRLKAV-PARLAIPGHGPAVADw-PQAAAAEERYLNGLATE 300 Methylococcus c...
WP_011480526 189 NTDLTVLDETTGTLWTGDLLFIERAPSIDGDIKGWLSAIEDLQKLtGIQLAVPGHGPATQDl-QGALSNQARYLNLLLHD 267 Methylobacillus...
WP_015830873 179 STDLTVYDTLSQTLWTGDLLFIERTPSLDGDIKGWINAINQLKEV-PAARAVPGHGPVSTHw-KEALNDEQRYLQTLLND 256 Methylovorus gl...
WP_013820482 179 DNDLSVYDKNTDTLWLADLLFLEHIPVIDGSIRGWLKEMERLEKN-HYKLVIPGHGRLVKDw-PASLQPQKAYLQRMASE 256 Methylomonas me...
WP_013149419 183 NTDVSVIESKASTLFTGDLLFIDRTPVLEGDIKGLITEVQKLKNS-PAKQVVPGHGPVTKDw-IVALNNDERYLSVLLTD 260 Methylotenera v...
ZP_08535905  267 IRAIINDMGTINEATESVGLSEkGKWLLFDDYHKRNITAAFTELEWE 313 Methylophaga aminisulfidivorans MP
ZP_08486382  267 LRAWIKNGGFLEQAVEAVGYEAkAEWKLFEDFHRKNVSTAFAELEWE 313 Methylomicrobium album BG8
ZP_08781666  257 IRAAIKKGQHIEDAVKTIGYSEkNNWALFDEYHRKNVTTAFAELEWE 303 Methylobacter tundripaludum SV96
ZP_05104328  265 IRAIINDFGTIEEATSTVGLDQqDKWLLFEHYHRRNVTAAFVELEWE 311 Methylophaga thiooxydans DMS010
ZP_01551621  261 IKEAIESGLGLQESIKTLGLSEsKKWELFDVQNARNINMVYPMMEWE 307 Methylophilales bacterium HTCC2181
WP_010959662 301 VRAAIRQHRTMEQAMETVGTSMrDEWRLFDEFNKRNVSTAFAALEWE 347 Methylococcus capsulatus
WP_011480526 268 VRKAIKQGHSMQQAMESAAASEsGHWQLFHEVNRRNVNLIYPVLEWE 314 Methylobacillus flagellatus
WP_015830873 257 VRASIKKGEVMEKAMDTAASSEkGKWALFDIVNRRNVNILYPALEWE 303 Methylovorus glucosotrophus
WP_013820482 257 IRTMIKQGKTLEYAVAHVGLSEkNNWQLFEQFHRKNVTIAFAELEWE 303 Methylomonas methanica
WP_013149419 261 IRASIKKGESMESTMNTAAASEkDKWVLFDIANRRNVNTIYPALEWE 307 Methylotenera versatilis
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