Conserved Protein Domain Family
rSAM_PoyD

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TIGR04517: rSAM_PoyD 
radical SAM family RiPP maturation amino acid epimerase
This model describes PoyD and its homologs. These are divergent putative radical SAM enzymes, with the classical CxxxCxxC motif but with few members approaching the cutoff score of pfam04055. PoyD appears responsible for catalyzing a unidirectional L-to-D epimerization of 18 the 48 residues in the core peptide of the first characterized polytheonamide. The RiPP (ribosomally translated natural product) precursor, and peptides encoded near many other members of this family, belong to the nitrile hydratase leader peptide (NHLP) family.
Statistics
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PSSM-Id: 275310
Aligned: 16 rows
Threshold Bit Score: 511.476
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AFS60640                22 AAHVKRFLEVWCSGL-YKKEDLLT---R---PQEILD---AHHV-A--IDPSLISVLFES-KFLRGKSGKFDLLPPQFDA 87  bacte...
WP_020034920             9 VAETKRFLELYTGIQ-SYKQEVDA---N---CNITEA---PFGF-R--FKPSSVRAIYDA-DYLLSQQEKGIELNPAEKA 74  uncla...
WP_007357380            38 ISHIKRFTEYYEADP-EFRKNVAI---A---PEQTVA---QYNL-K--IPLAEIRWLWDA-EFVKSQQSQDIPFPIALQR 103 Kampt...
PRJNA62289:RLEG3_02865  29 LAHIKRFLECFLGDA-AFKSALLEnldN---PRTVAA---RYGI-D--VDPIEMLPLWHP-NYLKFDREPERASWPLAVA 97  Rhizo...
WP_003551157            22 LSHVKRFMERLRGDK-AFLAALLEnvdN---SRSIAE---RYGI-D--VDPVDILPLWHE-SYAKYREEPERAAWPVAAA 90  Rhizo...
WP_018645180            42 FSDIKRFEERWHADP-KFRSAYAQ---N---PDCVGA---TFGL-R--VDPEVVRPIWDP-EYSGRDE------SASLQV 101 Brady...
WP_019679586            10 VALIKYFLELVTMDP-DFRSKLES---N---SEKVLK---ETGI-P--YNYEDLRILYDAdAYKEYEKEKEI--PLFVKR 74  Rumin...
WP_022848961             5 YSALKRLYECCSADPlQFPTRLRD---D---PSETLR---EIGVgEdvVRTDEALVMLD--GLCTQSWEK----NPYLAL 69  Chlor...
WP_012555901            24 LAHIKRFMERLVGDG-AFRTALSE---NvdnPRTVTE---RYGI-E--VDPMEMLPLWRS-NYLEYRLKPERVYWPLAVM 92  Rhizo...
WP_013259290            36 IAGVKRLLEWIMADQ-DFRLALRQ---D---PSQAAAlaaQRGV-P--IDPRIVEPIWRD-GFKTICPTVDYEKWPHVRL 104 Desul...
AFS60640                88 FRDFMMTKIQW-RQQIRTG--SAPADPIFREFRERQIQRCEIELGSDQNTAIVHTPVVFELTRGCSVKCWFCALDAPPLT 164 bacte...
WP_020034920            75 YREFCNQKIRW-RHRIRHE--CIPADKILRVWRERQIKRAKFEFGAERDDYFIHVPLMFELAEGCSVGCWFCAFSASKLS 151 uncla...
WP_007357380           104 FIDYEKARERY-FFRWRNN--MPDSDPRFQAWRDRQIARGDSEIRKSHNAQILHAPVAFELTKGCSVGCSFCGISAPRFS 180 Kampt...
PRJNA62289:RLEG3_02865  98 WREYIGEMVRH-RDLLRDEgnMSVAAPRFHAWRERQMRRCEDVLG-DFSKSITHPVIAFELSEGCTGGCSFCGLSAGRFK 175 Rhizo...
WP_003551157            91 WLEYHEELIEH-RDMLCEEskMAMVVPRFQTWRKRQILRCDSELG-MSPKSITHPAIAFELSDGCTGKCWFCGVSAGPFN 168 Rhizo...
WP_018645180           102 WVRYRDFQRRGsKHLLDACaaGQPADPRFVRWRQRQIYRANLEIGVSLTPNP-HIPASFELSRGCSVGCWFCSLSPPKLD 180 Brady...
WP_019679586            75 YRGFIDEKLNM-RNEMRADk-CKPENNAMMIWRQRQINRCWIEMG-YRNDSIIHTPTTYELDLGCSVQCEFCGIDAPCLS 151 Rumin...
WP_022848961            70 YRDRVLAVEKLiRQRASREqfASEKMYRYINIVRNRIFLTNREF--CGHDNVLYYPVAFELSKGCSVQCPFCGLAASRLA 147 Chlor...
WP_012555901            93 WDDYIREMLRH-RDMLLAEgeMSMVNPRFHAWRERQIRRCSGELG-GSASSVTHPIISFELSEGCTAGCWFCGLSAGRFK 170 Rhizo...
WP_013259290           105 WNEWIRDILRY-RDMLCLAadPGERQPRFAQWRQRRIEANNFFLG-QRNKAIVYPVFSYELSKGCSVGCWFCAFSAARLS 182 Desul...
AFS60640               165 GIFDYSPENARFFRDVLRVVKDVIGP-ASKWASSYWGTDPLDNPDQEKFSLDFREILGMYPQTTTAIPLRAPERTRKLLE 243 bacte...
WP_020034920           152 KLLPYSVENANLWRGVLKAGIDVIGP-AARWSTDYFATDPLDNPDHEKFCRDFHEIMGMWPQTTTAIAHKNIERLKGLLP 230 uncla...
WP_007357380           181 DIFTYTAENAQLWGEVLEVIKEICGP-AAGTGFCYWATDPLDNPDYEQFVSDFQAILGAIPQMTTAQPMKYPARVRSLLK 259 Kampt...
PRJNA62289:RLEG3_02865 176 GYFEYSKKHADLWRGVVGVAREMFGS-AASTGFCYNATDPMDNPDYDRFLLDYYQITGTLPQTTTAMPLKNLALTKRVLE 254 Rhizo...
WP_003551157           169 GHYEYSKDHAALWRGVVGVASEMFGP-AARTGFCYYATEPMDNPDYDRFLQDYYQITSALPQTTTAAPLKDQPLTRRVLD 247 Rhizo...
WP_018645180           181 DVFQYTPEHARLWREILEVIGVLAGP-AARRTICYSGTEPFDNPHYERFVADFVSAFGDVPFTSTAIPTRDVERTRRLLA 259 Brady...
WP_019679586           152 KVARYN-ENKELWRGILSSMKEILGD-AAGSGTCYYATEPLDNADYELFINDFYNEFSHLPQITTAAALRNIERTKKCIE 229 Rumin...
WP_022848961           148 GVARYE-ENRLLWHGILAAVLEIIGP-AAGMGPCYFATEPFDNPDYERFMAGYREILGTVPQTTTAAALREPERFRALLS 225 Chlor...
WP_012555901           171 GYYEYSEEHADVWRGVVGVASAMFGS-AARTGFCYWATDPMDNPDYDRFLFDYHQITGALPQTTTAAPLKDHALTKRVLE 249 Rhizo...
WP_013259290           183 GVCRHDAENARLWRQILEVGLDIFGPgAAQSGFCYWATEPSDNPDYLDFLADFRAVNGVICQTTTAAATRDIAWTRRLLA 262 Desul...
AFS60640               244 VSHASG-CLVN-RFSVRTPAQLRKIHDTFSAEELLYTELVLQNLESD-SVK--ARAGRlihfaddlpklaakdeekllnm 318 bacte...
WP_020034920           231 ESREAG-CRVN-RFSVITTKNLEKIHNSFTAEELRDVEIIAQSQDST-FMK--AKAGRyidsakksk------------- 292 uncla...
WP_007357380           260 FSDSQG-FTYH-RFSILSLKILQNVYAEFSPEDLIRVGLVMQNKESL-MNK--AVAGR---------------------- 312 Kampt...
PRJNA62289:RLEG3_02865 255 LFELYR-CVTN-RFSVLSTDQLNQIHATFSPEDLMGVELVLQGKGMP-SSK--AFAGR---------------------- 307 Rhizo...
WP_003551157           248 LFNRYR-CVPN-RFSVLNRDQLDQIHAAFSPEDLMGVELILQGKEAG-IPK--ALAGR---------------------- 300 Rhizo...
WP_018645180           260 ISPAYR-V----RFSVLSVGALAKIHAAFSPEETLPVLFGLRNEGAT-DARyvNFAGRa--------------------- 312 Brady...
WP_019679586           230 HMRNLS-PTIY-RCSVRSIDELRTFHKEFTPEELLLVELLPQYEGAPcNSF--TSVGR---------------------- 283 Rumin...
WP_022848961           226 FLGEDGlREAGmRISVCSLKEFYRLMRMYTAEELEDIELIANNPESV-NRY--SASGR---------------------- 280 Chlor...
WP_012555901           250 LFKRYG-RVTN-RFSVLSTNHLNQIHTAFSPEELMGVELIQQGKEAL-IKK--AFSGR---------------------- 302 Rhizo...
WP_013259290           263 MYEDEP-RSVKpRFSVLSLGMLRRIHQEFSAEELLRVECIPQNAESF-LCK--ARSGRageg------------------ 320 Desul...
AFS60640               319 lqerepelaakatsilinlpgSTEPIIRATSNADEEDTSEEYnvsinvP------GTTSCLTGFKINMVDRTVELLSPCP 392 bacte...
WP_020034920           293 -------------kienreaeKTVIAFEDTHSREEATKLAAEme--dqA------GSICCVSGFLVNMVEKTIKLISPVG 351 uncla...
WP_007357380           313 ---------------------SWEKQNKAGEASDELA-----------Q------STIACVTGFLFNMVERSVKIISPCK 354 Kampt...
PRJNA62289:RLEG3_02865 308 -------------------------ARNEILKNGDPTPLSKRd-----H------STIACVSGFLINMPRRRVQLITPVP 351 Rhizo...
WP_003551157           301 ----------------------AREQKLTGENSNDAVAGSDNn-----P------TTIACVSGFLVNMPRGEIRLVTPVP 347 Rhizo...
WP_018645180           313 --------------------rDNVARYRK-YQPGPPV-----------I------STPSCESGFKFNLTERTIRLVSPCA 354 Brady...
WP_019679586           284 ----------------------ACTELREISN----------------G------ETIACISGFVINLAEKSIRLITPCG 319 Rumin...
WP_022848961           281 ------------------------------MVGKEGI-----------R------YPISCIAGLMVRLPDREVSFMEPVN 313 Chlor...
WP_012555901           303 ------------------------ARLRKELEGN--------------H------TTIACVSGFLVNMPQGRLRLVTPVP 338 Rhizo...
WP_013259290           321 ------------------dqgRWREEWRGRAAESGGQPPADE------AelegyaGTTACVAGYLVNMVERSVRLISPCE 376 Desul...
AFS60640               393 ANERWPLGHIVFEEGTFDTAEDLRTLMLgMISRNMAERVVPESLVRFVPRLIY--REDPEGFRLGSVFGNGVI-CHDPtr 469 bacte...
WP_020034920           352 ADERWPLGMIVYDQADFKDEKDFPEVLQ-MMQNRIKLRLDVNDIPRFSTKAEF--QLLEHGFQLKSAAIKISF-TQEGya 427 uncla...
WP_007357380           355 ADDRWPNGYRVYDRGNFESANDLKVLLErMITQQMPLEIRADQNLRFRRDLKH--ENLDDGFKLSTRFLTLKF-RHRP-- 429 Kampt...
PRJNA62289:RLEG3_02865 352 ASTRWPLGYRILDERFFGTPDEFQDEVQsMIDEHMHESPPSNRPIRFRGDLQY--EAKRHHFLLRSCHWEYQV-PDNA-- 426 Rhizo...
WP_003551157           348 ASERWPLGYRIVAKRLFKTVDEFRESIQrIIDEHMHESPLPNRLIRFRRDLKY--EAGKPHFNLRSRNVHYTV-GDNV-- 422 Rhizo...
WP_018645180           355 PDHRWPMGYRVYDEASFETGGDVARIVEdMMSRHMTRTASDLPVLRFPSHLRC--ESISTGFALIGRRLRQRF-EDTSdm 431 Brady...
WP_019679586           320 ATKQHPTGEKILGKKFFTDIENFRDTVKnMIEKYIVNEIKSDQVLSFYPYITY--QESENSL-LGNGGFKISFnSDDNp- 395 Rumin...
WP_022848961           314 PSPEYPTGVQTFETLSFRSAEDFREKASfLIEKWAIDRIHADTRLRLTPRVLFsrEDAVNGL-LIGKAGGIRLrIDSN-- 390 Chlor...
WP_012555901           339 GSDRWPLGYRTVDERFFRTPDEFREGLQgIIDKHMLESLPPDLPIRFRRDLKY--EAGNRRFRLYSRYFEQGI-EDDV-- 413 Rhizo...
WP_013259290           377 ASAQWPLGYKVHATGSFASAAGYRDFIRrTIDEHMPESLPTDAPVGLARGLKI--SEDEDSLAIASRAKVLRVrPRQH-- 452 Desul...
AFS60640               470 saYLHRLGNLLREGKKRAGEIAMLCFYeFGVPENYTMGSINNMFHQGIIA 519 bacterium symbiont of Theonella swi...
WP_020034920           428 -dVLRYVGELINEGVKSANEICLLTFYkTSKPMQLTMGILQELFKGGYLD 476 unclassified Verrucomicrobia (misce...
WP_007357380           430 --LIKELGEAILKGNKTAAEIVAEFEK-LGVNATETYYSLNLMFNRGVLD 476 Kamptonema
PRJNA62289:RLEG3_02865 427 --ASISAGDLIAGGHCTASDLVARVVR-DGASAIAVADGLDQLHMKGLLE 473 Rhizobium leguminosarum bv. trifoli...
WP_003551157           423 --APISLGDIIASGDHTTAQLVARAVT-DGSNALSLASWLDNIFMQGLIE 469 Rhizobium leguminosarum
WP_018645180           432 -pSMARLGELIASGRHNASAIVTLLDReCGVTRETATATLEELFHLGVLE 480 Bradyrhizobium japonicum
WP_019679586           396 -tLYKELIQLILKGDKTKREIASELYD-KDFQPANVYLAINNLYKAGAIM 443 Ruminococcus flavefaciens
WP_022848961           391 --MEAMLLHLQGDGISVSEAVASGEV--NVLAAGRLLGAMETLFEKGFIT 436 Chloroflexi bacterium oral taxon 439
WP_012555901           414 --APISVGDLIAYGECTASELVGRAIA-DGASALGVADLLDRLYAAGLIE 460 Rhizobium leguminosarum
WP_013259290           453 --IYAQVARLLQDGQQRPEAIMAELMD-QGQSPFDVTGALDYFFKMGLLE 499 Desulfarculus baarsii
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