Conserved Protein Domain Family
tcm_partner

?
TIGR04474: tcm_partner 
three-Cys-motif partner protein
Members of this family occur regularly as a partner to as a member of family pfam07505, which has been called a phage protein but which seems to occur also in other contexts. Members average about 400 residues in length, but the conserved region covered by the model averages 260 residues and excludes the C-terminus. Conserved motifs suggest enzymatic activity. Note that its frequent partner protein (see pfam07505) has a three-cysteine motif that resembles the Cx3CxxC motif of radical SAM proteins, and that in one branch (see TIGR04471) actually becomes Cx3CxxC. We suggest the name three-Cys-motif partner protein (tcmP), and renaming pfam07505 to three-Cys-motif family protein
Statistics
?
PSSM-Id: 275267
Aligned: 49 rows
Threshold Bit Score: 167.49
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
ZP_06922318    9 PATAAKHRLYQRYLDAWWPIlLQT-SQstgysrPRVTLLDAFAG--PGRYEDGEP----------------------GSP 63  Streptomyces sv...
ZP_01551030    9 KDTGRKLNALRQYLQAYSIA-LQD-QG------FATIYIDAFAG--SGTRTETVPalplfgrd------speelktpGSA 72  Labrenzia aggre...
ZP_05842540   13 PWAREKLEALEKYLRFYCSV-LQN-PR------LKLVYIDGFAG--APVTTLRGIsatkskgfldddqpedqaefvmGSP 82  Rhodobacter sp....
ZP_05058518   29 LWTKNKAHFIARYLKSFTYV-TRH-GT----------YIDAFAG--PQHEESRNDs---------------------WAA 73  Verrucomicrobia...
WP_012623875   9 PWSIKKLDLLRNYLIAYTQI-MTSeKIks--wcKSRHYVDAFAG--ATYHVDKESyel-----------------veGSP 66  Desulfovibrio d...
WP_009547148  14 kWSEDKLDLLAKYLEAYSII-MNK-QKek--wlTKYYYIDAFAGslRPRAKDDEKry------------------ikGSP 71  Cyanothece
WP_000389124  13 EWTELKLEIVKKYAESFQGA-LKN-LN------FKTIYIDGFCN--SGEAISKKTsek-----------------idGSA 65  Leptospira inte...
WP_013861008   7 YWSRNKLEILQGYLPAFNNA-AKN-KSs------ERIYIDLMAG--EPENFDRDTget-----------------fdGSA 59  Microlunatus ph...
WP_013893479  12 PDTSRKLKCLQEYLQAFSIA-LRN-Qd------FACIYIDAFAG--SGTRTEVRPglplfgpdf----aepeeittpGSA 77  Mesorhizobium o...
WP_010912641  10 lsTDLKLSVVEEYLRAFTLA-LHS-KF------PELWYIDAFAG--TGERTVRVAgaiatdllpa---lekrierrrGSA 76  Mesorhizobium loti
ZP_06922318   64 VFILDRLLGHHAvdrmhlsprrvhLIFIEKDRARHEHLVAELv---SRFGPLKdlpvrVEVRRGEAGRDS-L-AVLDELG 138 Streptomyces sv...
ZP_01551030   73 RIALEVNPPFHT------------LALFEADPDRFKQLSQLR----AEHPDRK-----VVLRHGDANDFV-R-RLCKGVP 129 Labrenzia aggre...
ZP_05842540   83 IRALDIEKGFDR------------HYFFDLDDRRVAELEELK----PVWPKKW-----IYVQVGDANERI-R-ALMQKIG 139 Rhodobacter sp....
ZP_05058518   74 KLVMQNEPAWLRn-----------FHLFDLASDQIGHLKNIKkeylEKHPKKPlr--tVTITEGDCNTTL-P-RFLNENP 138 Verrucomicrobia...
WP_012623875  67 RIALNLEPGFDT------------YSFIDMDRRRIEDTIDPL----RDEYPEKan--nIFTHCGDCNQILtE-KILPQFP 127 Desulfovibrio d...
WP_009547148  72 LRALQIEPKFDg------------YWFIDISSQRIERIERLK----DDFSDCn-----IEVYHGNCNEVLcD-QLIPKFN 129 Cyanothece
WP_000389124  66 LRALKVTPPFHE------------YHFVDLEEKRVHHLQSLV----SSETn-------AYFHIGNSNKVL-PaKVFPKFH 121 Leptospira inte...
WP_013861008  60 RIALEAQPTFTR------------FAFGEMPPKSARLKADLD----NRYTGAP-----FRVYAGDCNVTV-D-RMLSDLS 116 Microlunatus ph...
WP_013893479  78 RIAIEIDPPMHSi------------vLIEQDTFRFSELQTLV----EEYPDr-----kIIVRNGDANKLV-Q-RLCTNTP 134 Mesorhizobium o...
WP_010912641  77 RIALDITPHFSR------------YIFMDKMRRHCAALRCLA----NEYPDr-----sIDIVRGDANEAI-K-AELASQR 133 Mesorhizobium loti
ZP_06922318  139 AWG--H-------PILGIFDSWGSVnVPLHVMSRIARNR------SSEVITTFGPN-WFSR--------RE-E---L--- 187 Streptomyces sv...
ZP_01551030  130 WHA--KqsglkgmRGVVFLDPYGME-VEWKTAEAIAATE------ALDCWYFFPLS-GLYRnaphnptkLD-A---S--- 192 Labrenzia aggre...
ZP_05842540  140 GFG--Dv------KGVAFLDPYGPH-LEWATLEALAATR------KFEVIVNLPIHmAINRllak-nvdRN-P---E--- 196 Rhodobacter sp....
ZP_05058518  139 IQE--Ke------ASFCLFDQRSTE-CAWETVKYVAEHKggkgghKIELFYFLPQG-WIDRti----ksWK-N---D--- 197 Verrucomicrobia...
WP_012623875 128 QSGfcPq------RGFMFLDPYGIN-LNWSTVEAVANSR------IFDVLINFSVM-GVYRklg---gkPPsD---C--- 184 Desulfovibrio d...
WP_009547148 130 -SS--St------RAFVFLDPYGLS-IDWETITKLANTR------KCDIFVNFSVM-GITRilpk-drePK-P---E--- 184 Cyanothece
WP_000389124 122 YDK--Ye------RIFCLLDPYKLT-LDWDVVKAAGKSK------ITDVLINFPVL-DMNRnvl---wsNN-E---Sisd 178 Leptospira inte...
WP_013861008 117 DVR--Wa------PTFAFLDQQAAE-LRWDTMAKLAGFRsg--ktKAEQWILWSPA-MIVKgvm---gtNG-A---A--- 174 Microlunatus ph...
WP_013893479 135 WRG--SeivgrgiRGVIFLDPYGME-VSWETVEAIAKTE------ALDCWYFFPLS-GLYRnap---hdPA-KldlG--- 197 Mesorhizobium o...
WP_010912641 134 WVG--K-------RAVMFLDPYGMd-VAWSTLEAIRKTE------AIDVWYLVSLA-GMFRqathdpkkLT-A---D--- 189 Mesorhizobium loti
ZP_06922318  188 -NADILDTVFGGRGfWTAAAD-------------ELGpdEK--------WRA----W------------------LRTYR 223 Streptomyces sv...
ZP_01551030  193 -KQASLDRVLGTTD-WRQCWY-------------DHS--IA--------PET----Lfeteneai--vradvdaiEVYVA 241 Labrenzia aggre...
ZP_05842540  197 -WEEMIDRCFGTPD-WRRIVY-------------PEHltLF--------GEI----Etpkaeg-------vprmlLALYV 242 Rhodobacter sp....
ZP_05058518  198 -VESRCLRWWGRAD-VLNFLK-------------LRS--NE--------RGI----Am-----------------ADRFR 231 Verrucomicrobia...
WP_012623875 185 -DRQKINALMGTED-WFEVAY-------------AEN--KQ--------LSL----LelaepqyerrsreiaerlVKYYQ 235 Desulfovibrio d...
WP_009547148 185 -HIELLNRVMGNTD-WITEVYkqpptvqlslfpeQSE--QT--------SSL----Kreiik---------aewlADLYT 239 Cyanothece
WP_000389124 179 nNREKMNRFWGDDS-WKGIVY-------------SEE--NDlfgpvtvrNEK----Pvq--------------kiLEAYA 224 Leptospira inte...
WP_013861008 175 -FADKVDNLYGSGR-WRQILD-------------ARI--NE--------KSIeaseFrr--------------emVNLLR 215 Microlunatus ph...
WP_013893479 198 -KQASLDRVLGASD-WRSRWY-------------NHE--IA--------RED----Ifetqglaa--rradvnaiEAYVK 246 Mesorhizobium o...
WP_010912641 190 -KRAALTRMLGTDG-WEDAWY-------------RRE--QS--------TDL----Lgqvdethq--rvadvaamEQFVG 238 Mesorhizobium loti
ZP_06922318  224 DALRR-A---GFGYQL-QFEL-VPr--TGQPL-YLVFGTGSTAGLKAMKDAMWKVD 270 Streptomyces sviceus ATCC 29083
ZP_01551030  242 ERLRS-If--KGVVLP-PMRL-RHn--SGAPLaSLFFAMSNQSKNAVDLGTRIAGH 290 Labrenzia aggregata IAM 12614
ZP_05842540  243 ERLRD-I----FPCVA-TPRL-IRd-tQKKPLyYLLWAGPHAKGKQGAEYILGYGE 290 Rhodobacter sp. SW2
ZP_05058518  232 EEL-------GYKYSF-PFPI-QKfgkNGAVMfWMIHASDHSRATDLMRQSYNFIG 278 Verrucomicrobiae bacterium DG1235
WP_012623875 236 ERLQT-C----FKYVS-RAVImKNs--SGGPMyALILASHAELAKKKMEEIFARdk 283 Desulfovibrio desulfuricans
WP_009547148 240 KQLRT-I----FQYVSqPVLM-KNs--TNSVLyALCLASHNKTAVKITNDIFKLYE 287 Cyanothece
WP_000389124 225 DRLKTvA---GFAEVAkPLPM-RNs--VNAIVyYLIFATQKSLAIKIINSIMKKYR 274 Leptospira interrogans
WP_013861008 216 WQFET-QlryGHTIRI-PMTM-KN----NTDLyDMVFATDHNAGLKIMSHLYKKAA 264 Microlunatus phosphovorus
WP_013893479 247 ERLET-Af--KGAVLD-PVRL-HHr--NGAPLaSLFFAVSNTSSAAVKLATKMASH 295 Mesorhizobium opportunistum
WP_010912641 239 KRLAS-L---FPKVLP-PRRL-RNd--RGAPMfSLFLAISNPEPKAIGLATRIGNH 286 Mesorhizobium loti
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap