Conserved Protein Domain Family
rSAM_mob_pairB

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TIGR04470: rSAM_mob_pairB 
radical SAM mobile pair protein B
Members of this family are the downstream member (B) of a pair of tandem-encoded radical SAM enzymes. Most of these radical SAM gene pairs have an additional upstream regulatory gene in the MarR family. Examples of high sequence identity (over 96 percent) from cassettes in several Treponema species of the oral cavity to those in multiple Firmicutes in the gut microbiome suggest recent lateral gene transfer, as might be expected for antibiotic resistance genes. The function is unknown.
Statistics
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PSSM-Id: 275263
Aligned: 3 rows
Threshold Bit Score: 579.956
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ZP_08418994   8 IRDVETKNIMTKSKLPVGGYSVNPYVGCTHGCKYCYASFMKRFTGHTEPWGTFLDVKHWLEIKNPQKYRGQRIVIGSVTD 87  Ruminococcaceae ...
ZP_02423788  10 IREVETKNIMTKSGLPVGGYSVNPYVGCTHACKYCYASFMKRFTGHTEEWGTFLDVKHWPEIKNPKKYAGQRVVIGSVTD 89  Eubacterium sira...
ZP_02424347   6 IKEIDVKSVMTKSSLPVGGYSVNPYVGCPHACRYCYASFMKRFTGHTEPWGTFLDVKNWKPITNPHKYDGERVVIGSVTD 85  Alistipes putred...
ZP_08418994  88 GYLPQEEQFQNTRKLFEQLKDSGAEILICTKSDLVVRDIDLLREMGKVTVSWSINTLDEDFRRDMDKAVSIERRLHAMKQ 167 Ruminococcaceae ...
ZP_02423788  90 GYNPQEEQFRNTGKLLEQLIGSDADILICTKSDLVVRDIDLLKKLGRVTVSWSINTLDENFKNDMDSAPSIERRIAAMKQ 169 Eubacterium sira...
ZP_02424347  86 GYNPYEEEFHRTRRLLEELRGSDAEIMICTKSDLVLRDLDLLKSFPKVTVSWSVNTLDEQFCADMDNAVSIERRLKAMRQ 165 Alistipes putred...
ZP_08418994 168 IYDAGIRTVCFIAPVFPGITDFEAIFHRVKNQCDLVWLENLNLRGGFKQEILDYIQEKHPHLTTLYQAIYQKGDRSYFRG 247 Ruminococcaceae ...
ZP_02423788 170 VYDAGIRTVCFVSPVFPGITDFEAIFERVKNQCDLFWLENLNLRGGFKKTIMDYISGKYPDLVPLYDEIYNKHNRSYFEA 249 Eubacterium sira...
ZP_02424347 166 TYEAGIRTVCFVSPIFPRITDVKAIIEEVKDYADLIWLENLNLRGQFKGGIMTYIREKYPDLIPLYEEIYNKKRLEYWQA 245 Alistipes putred...
ZP_08418994 248 LEQQAEQLAMENGCPFVDNELPYGRAEPGHPVIVDYFYHEEVRGS 292 Ruminococcaceae bacterium D16
ZP_02423788 250 LEVKAEEMAKKYDCPFVDNEMPYGRVPQGHPVIVNYFYHEEIRGT 294 Eubacterium siraeum DSM 15702
ZP_02424347 246 LEQDISNYAKEQGFPYRINDLPYGRSEKGKPVIVNYFYHEKIRLT 290 Alistipes putredinis DSM 17216
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