Conserved Protein Domain Family
rSAM_Pput_1520

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TIGR04434: rSAM_Pput_1520 
B12-binding domain/radical SAM domain protein, Pput_1520 family
Members of this family are radical SAM domain (pfam04055) enzymes with an N-terminal B12-binding domain (pfam02310), as is fairly common for radical SAM enzymes with lipid substrates. However, both domains as found in this family seem to be long-branch. The function is unknown, but all cases a PLP-dependent enzyme (a cysteine desulfurase homolog) is found nearby.
Statistics
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PSSM-Id: 275227
Aligned: 3 rows
Threshold Bit Score: 880.374
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ZP_21231629   19 LRAIAVSAPDWIKGAKDSRALNSQDPASLFNACRYAAHRTFDPSSAWSRSNWAGTRAQRRA-----QTLLMYSLDDMPVF 93  Cystobacter fus...
WP_014755785  61 IRAIAVSAPECISGHKSGRALNSTDPVSLFNACRYAASLAKQRKGAWGNSNWGRLDKKLRE-----HFLLMYSLDDMHRY 135 Pseudomonas putida
WP_014746398  14 LRAVAVSAPDWVAGAKDDRALNSRDAASLYNACRVAAAEAAAGRGAWGASNWAAADPRAARaaaraSTLLMYSMDDMPAF 93  Tistrella mobilis
ZP_21231629   94 AEMLRRERPNLLLIGAMTLCLPGAVACASLAKELLGEQVVVVLGGRHPSESMYLEKHSERMPEHVRHHPSSPLRLMATGR 173 Cystobacter fus...
WP_014755785 136 ENLIQASRPNILFIGAMTLCMPGAVECAKVARKMFGDRLLIVLGGRHVNETIYLADERKRLPSLVKHHRASPGRLIRECE 215 Pseudomonas putida
WP_014746398  94 RALIERQRPNLLLIGAMSLCLPGAVACAREAREILGDRVAIVLGGRHASETVWLPDRSDRRAATLGRHAGAPLELIHAGR 173 Tistrella mobilis
ZP_21231629  174 LPRVFDLVVAGDGEHLIAALGEAVAAAEAEGsadlSCSVLERLDARVPGSWIAgaldgDTPRV---LPSTGARLDYSRMP 250 Cystobacter fus...
WP_014755785 216 IPPLFDVIISGEAEKLIAEIGELFSRCNQSP----ATFIAENLDMKTEGRWIA-----DFPRIdntLVSDGVPLKRDELP 286 Pseudomonas putida
WP_014746398 174 LPAVFDAVAMGDGEYLIAALGRAVEAAVRRSl--hPAALFHEIDPATPGDWILglddrGRPGY---LVSRGVAMNQMALP 248 Tistrella mobilis
ZP_21231629  251 SPSRMFGAVAGFNVFGGRVTAHAFSDTGRGCVYDCGFCSERSSVTGGLRDAASSSERLHRQLAEAVTVISEDHPARGASA 330 Cystobacter fus...
WP_014755785 287 SVVGTFGVTASFDVFEGRMTSHIFSDTGPGCIYDCNFCSERRSIAGNIQDIQGAPRRLYNQLNETVSAVMQDHPSKGASA 366 Pseudomonas putida
WP_014746398 249 SPARTFGVSASFGVFGGRMTAHVFSDIGRGCVYDCNFCSERVSATGGVRDLANSADRLHGQLAAACRTIAEDWPGRRASA 328 Tistrella mobilis
ZP_21231629  331 FVEDSVILGGSPRLVDQFVDRLESEPLDIVFGAQLTIDQILTRRAQLARLAGVGLRYVFVGVETLVPEAIGGMSKDLGRH 410 Cystobacter fus...
WP_014755785 367 FVEDSIFLSGSPVAITQLCQLLEKAPLEVIFGGQFTIDQILRKKDVIQRLAKCGLRYIFIGLETLEPQEIGGMSKDVDGN 446 Pseudomonas putida
WP_014746398 329 FCEDSVLLGGATRLIDRFCDLMDRQPLDIRFGGQLTIDQILTRPAEVARLARAGLSYVFIGVETLSPEEIGGMSKDVGRK 408 Tistrella mobilis
ZP_21231629  411 QAPWLSRIHRALAFLGELGIHCGCAILFGLGETQERRLELLEALRMMRGMYGMPSPVSANWAVQHPLCGQDGGAGYEYIE 490 Cystobacter fus...
WP_014755785 447 KQTWKDRFLQALDFMAANHIDCGCALLFGLGEAHISRRNLLNGLIKLKQETGQPITLSANWAVQHPLRSSRESENENYLR 526 Pseudomonas putida
WP_014746398 409 RASWTDRMHRAFDVLGEAGIDCGCAVLFGLGERHESRLALLDTLDRFRLSHGAPDPISLNWAVQHPLCGEDGGAGYDYVD 488 Tistrella mobilis
ZP_21231629  491 WGTPEGPFLECFHRFGEASVRYPLPHVGPPRLEEVREVTARLDTL 535 Cystobacter fuscus DSM 2262
WP_014755785 527 WGTPEGELLEYFHRFGEASLEYPLPNVCAPQVGEVKEIILLLNEF 571 Pseudomonas putida
WP_014746398 489 WGTPEGPYLDLFHNFGEASLRYPLPQVGAPRLaevaevvaaadav 533 Tistrella mobilis
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