Conserved Protein Domain Family
rpt_T5SS_PEPC
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TIGR04393: rpt_T5SS_PEPC 
T5SS/PEP-CTERM-associated repeat
This model describes a repeat about 50 amino acids in length, appearing sometimes more than ten times in tandem in a single protein. Most proteins with this repeat have a C-terminal autotransporter domain (TIGR01414, pfam03797) and/or an N-terminal type V secretion system signal peptide (pfam13018), while others instead have a C-terminal PEP-CTERM domain (TIGR02595).
Links
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Statistics
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PSSM-Id: 275186
Aligned: 262 rows
Threshold Bit Score: 32.4335
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
ZP_01549777   537 DAYLGYKGGSSGSVTVT-HGSTWDGaGGAIWIGVNGEGSLLVADGGQVNT 585  Labrenzia aggregata IAM 12614
ZP_11147967    81 NASVGATTGSEGYLLVSgAGSSLIA-TGGMVLAENGTATVTFEAGAQINT 129  Alcanivorax pacificus W11-5
ZP_11198468   227 RAILGEGAGTEGATLISgAGSRWTV-AADTVIGNAGVSTLTVTGGGKLLS 275  Rhizobium lupini HPC(L)
ZP_12507475   374 SARLGNSAGATGDVTVDgAGSVWTVgGGNLDVGVDGTGSVTVTGGGLVGS 423  Agrobacterium tumefaciens F2
ZP_12978979   593 DLYAGSAAGSTGNVLVSgVGSRVAV-GNLMVVGDAGNGSVEITGGASLAA 641  Agrobacterium tumefaciens 5A
WP_014237161  543 QAILGDLAGTTGTAVITgSGSSLTA-SGDFNVGRFGTGSLTLGSGGTLSS 591  Azospira oryzae
WP_014074749  786 DIRLGAAAGGQGSLTVSgMGSSVST-TENFIVGSYGTGNVTVDDGGQIQG 834  Sphingobium sp. SYK-6
AHK03112      382 TARLGVVAGATGAAAVDgQGSVWTVnRGDLEVGVNGTGSLAVTGGGLVDA 431  Agrobacterium tumefaciens LBA4213 (Ach5)
WP_025595705  225 RGVLAEDLGTMGTALVSgEDSHWTM-SGDMVVGEAGVGKLTVTGGGTVIS 273  Agrobacterium tumefaciens
WP_013164952  217 RVTVGAANGSEGFLDISgGTTSWIA-SSEFIVGEEGSGTVTVSDGATVES 265  Starkeya novella
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