Conserved Protein Domain Family
grasp_GAK

?
TIGR04356: grasp_GAK 
ATP-grasp enzyme, GAK system
Members of this family are ATP-grasp family enzymes related to a number of characterized glutamate ligases, including the ribosomal protein S6 modification enzyme RimK. This group belongs to a conserved gene neighborhood that also features an HPr kinase-related protein (see TIGR04355). We assign this system the initial designation GAK, for Grasp (this ATP-grasp family enzyme), Amphipathic (for the member of family TIGR04354, designated Amphi-Trp), and Kinase, for the HPr-kinase homolog TIGR04355.
Statistics
?
PSSM-Id: 213969
Aligned: 10 rows
Threshold Bit Score: 485.694
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
ZP_05115140    5 KIGVVGIPGKWSTEALADVIEAKTGYRL-VTDMAAVTLDLETGSVMYQGQDLCALDGLIIKKISEVYSPHALDRLELLRF 83  Labrenzia alexa...
ZP_08422298    3 KIAVIGDPRGWSSQRLVEAVARRTGFAL-LVDMAEARLDLTRGTVFFRGHDLSKLDGLIIKKIAPAYSPDILDRLEMLRF 81  Desulfovibrio a...
ZP_07015691   10 KIAVIGNPGSWSTEKLADELYERTSFRL-VVDPAQLAFDMQGRTLVAGNTDLAELDGLAIKKIGPVYSPDMYNRLEILRF 88  Desulfonatronos...
ZP_01913331    7 RIGVIGIADGWSTERMLDALEQRTGFRR-LIEMQDVAFDFEHGRLVHEGFDLSELDGVVVKKIAKEYSPDALDRVELIRA 85  Plesiocystis pa...
WP_015752411   3 KIAVVGTTAGWSSEKLTATVAGHTGFHL-LVDMNRCVLDLERNTVWFENHDLSTMDAIMIKKIGARYSPDLLDRLEYLRL 81  Desulfohalobium...
WP_015852956   2 KIGVIGLKGAWSSEQLAKAVAEKTSREPrIFEMQDMRLDLPSGRAIVEGEDLSTYDALIIKKIGRQYSPDLLDRLEMLRM 81  Desulfovibrio s...
WP_011371189   9 KIGVVGIPGKWSTEVLADAIEAKTGFRM-VIDIEKVVAYLDEPSVRYKGTCLCELDGIIIKKISQTYSPAVIDRLEILRF 87  Thiomicrospira ...
WP_013834870  14 KIAVVGIPGKWSSELLADALAAHTGFKL-IIDLGEVSADLTNNRLIYRGQDLTELDALVIKKAATRYHPGMIDRLEMLRI 92  Thioalkalimicro...
WP_013794669   5 KIGVIGIPGKWSTEVLADRLEAQTGFRA-VIDMNQVELCLDSQGLMYQGLDLTTLDGLIIKKISEVYSPATEDRLRLLSY 83  Marinomonas pos...
WP_013257213   8 RVGVVGLPEGWSTMRLQQALTQRGATAP-IIDPRRLELDLERGVVRHLGQNLAEMDGLALKKLGASYSPHLLDRLEMLRF 86  Desulfarculus b...
ZP_05115140   84 AESRGVKIFSRPEAVLRLIDRLACTVSLRAAGAPMPATIVTEDLKAAEAAVERYGAAVFKPLYSTKARGMCII---EAGA 160 Labrenzia alexa...
ZP_08422298   82 LYGRGLPVFSKPCSIIKLVDRLSCTVGLRLGDIPMPETTATESVAEAVAMVESYGKAVFKPLFSTKARGMTVI---EAGP 158 Desulfovibrio a...
ZP_07015691   89 FCSLGKPVFSRPEMVMMAVNRLSCTVNLQIGNIPMPPTVITESRDEAVRAVRKFGKAVFKPLFSSKARGMLLV---EDNA 165 Desulfonatronos...
ZP_01913331   86 LEGSGVRVFSRPESMYALIDRLSGTVRLRQGGIPMPPTVVTESLDEGEAAVRRLGAVMGKPLYTSKARGMEVMr--AEDP 163 Plesiocystis pa...
WP_015752411  82 LESKGVPIFSAPRKIMGVLDRLSCTVTLREAGIPMPPTQITESPEQALRIVKEYGEAVFKPLFTSKARGMEII---RADD 158 Desulfohalobium...
WP_015852956  82 LEGRGVKIFSSPYSILRVLDRLTCTISLQLGDIPMPPTTITEDVDHALAAVEEYGEAVFKPLYSTKARGMFVL---KPGP 158 Desulfovibrio s...
WP_011371189  88 VEKCGVKIFSKPQEIIRLVDRMSCTVSLAKANIPMPPTIITEDIEAAYEGVLSFGKAILKPLFSTKARGMEVLnsaSSAK 167 Thiomicrospira ...
WP_013834870  93 AEAQGVKVFSSAEKIIRLVDRLSCTVALRQADIPMPQTLVTENLDAALEAVHSLGEVILKPLFSTKAKGMVLLsaqTPLK 172 Thioalkalimicro...
WP_013794669  84 AEQAGVRLFSPTHSVGNLINRLAGTLALQHGQIPMPKTRVTENLELAFETVRAFGSAILKPLYSTKARGMIMLtqeDSDE 163 Marinomonas pos...
WP_013257213  87 LAEGGLPIFSAPARVGPMIDRLGCTLLLRQNDIPMPPTVVTEDQDVALEALERLGPCVLKPLYTSKARGMIVL---EPGN 163 Desulfarculus b...
ZP_05115140  161 NARTEIAAFA-EDHPVMYIQQKLNLSGQDLGMVFLGGDYLCTYARVSQSDSWNTTIHS-GGKYAPFEPDAGLIELARQAQ 238 Labrenzia alexa...
ZP_08422298  159 GAWTEVEVFKaRGNQVMYIQKFVNHAGRDLGVTFLGGEYVATYARQGSEDSWNTTTRS-GGKYAACEPGPEIIELARRAQ 237 Desulfovibrio a...
ZP_07015691  166 NCGSAIANFQaSGNTAMYIQKMVQIPGRDLGISFLGGKYIGTYAR-RKGNSWNTCTSN-GGKYEPCEPDAETINLASKAQ 243 Desulfonatronos...
ZP_01913331  164 ELRAKLEQFK-AANPVMYLQQLVDIPGRDLGVVFLGGEYLATYARVSRSGSGITSTSQ-GGKYEAHEPSAEIIELARKAQ 241 Plesiocystis pa...
WP_015752411 159 HPEEAIAAYR-ETNPIMYIQKKIELPDQDLGLAFLGGEYLTTYARQKTNGAWNTTTNS-GGKYAPFTPQAETIELARKAQ 236 Desulfohalobium...
WP_015852956 159 DARKIIEDYH-QEYNTMYIQKTIDLNDSDLGIVFLGGKYLTTYARCKTTDSWNTTTVN-GGKYAPIDPPQEIIDLAQKAQ 236 Desulfovibrio s...
WP_011371189 168 TLKAQLNQYY-DKQGFFYLQKKLKLPGKDMGLVFLGGEYQGAYARVSSGNSWNTTIHS-GGKYAEAHPSDEIIEIAHKAQ 245 Thiomicrospira ...
WP_013834870 173 KLREQLFDFQ-KEQGFFYIQQKIHLPNQDLGLMFLGGQYQGTYARVNQKHAWTTSTET-GGKYAPAEPQAETLAIAERAQ 250 Thioalkalimicro...
WP_013794669 164 FVRNALEEYR-QLQSIYYIQQTVNLDGRDLGMVFVGGEYVCTYARVGNEDSWNTTINS-GGRYEGFEPDAELIELGRKAQ 241 Marinomonas pos...
WP_013257213 164 GCAAALAAFReQGHRFFYLQQMVRPGGRDLGLVFLGGQYLASYARAARFEPVHGRPQPgGGKYLACDPGPEVIALAARAQ 243 Desulfarculus b...
ZP_05115140  239 APFGLDFTTVDVALTDEGPIVFEVSAFGGYRGAKEGCGVDAAAALADHVIAKV 291 Labrenzia alexandrii DFL-11
ZP_08422298  238 ALFDLDFTCVDVVETPDGPKVYEVSAFGGFRGLLEANDIDAAGLFVEHVLRKL 290 Desulfovibrio africanus str. Walvis Bay
ZP_07015691  244 DLFNLDFTCVDVVETEDGPMVFEVSAFGGFRGLYHACGLNAAGMYAEYIINQL 296 Desulfonatronospira thiodismutans ASO3-1
ZP_01913331  242 ALYDLDFTCVDVVETADGPKVFEVSAFGGFRGLLEACKLDAAAKYADYAIATI 294 Plesiocystis pacifica SIR-1
WP_015752411 237 ALFGLDFTCVDVAETEEGPLVFEVSAFGGFRGIQEASGQDAAQLYLDYVLQRI 289 Desulfohalobium retbaense
WP_015852956 237 AIFNLDFTCVDVAITPDGPFIFEVSAFGGFRGLRDARGIDAAAHYVDYVINKV 289 Desulfovibrio salexigens
WP_011371189 246 SQFDLNYTTVDIAETEEGPVCFEVSAFGGFKGVHEGLGLDMATQYAHYVIETL 298 Thiomicrospira crunogena
WP_013834870 251 AVFKLDFTTVDMAETADGPMCFEVSAFGGFKGAYDALGINIAERYADYVIQQL 303 Thioalkalimicrobium cyclicum
WP_013794669 242 ACYDLSFTTVDIALTDQGPVVFEVSAFGGFKGALEGCGVDAAEVYADYVLKEV 294 Marinomonas posidonica
WP_013257213 244 APFGLDFTCVDVAETADGPVVFEVSAFGGFRGLLESQGVDAAGLYADYILEKL 296 Desulfarculus baarsii
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap