Conserved Protein Domain Family
spiroSPASM

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TIGR04321: spiroSPASM 
spiro-SPASM protein
This three-domain protein is restricted to the spirochetes and widely distributed (excepting Borrelia). It has a conserved C-terminal SPASM domain, a 4Fe-4S binding domain shared by a number of peptide-modifying and heme-modifying radical SAM proteins. It has a central radical SAM domain, although half the members have lost the signature 4Fe-4S-binding Cys residues, fail to register with the radical SAM domain definition of pfam04055, and must be considered pseudo-SAM proteins. PSI-BLAST shows a relationship between the N-terminal domain and various predicted glycosyltransferases (e.g. Bacillus subtilis SpsF) and cytidyltransferases. In some Treponema species, this protein appears to split into two tandem genes.
Statistics
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PSSM-Id: 275125
Aligned: 16 rows
Threshold Bit Score: 558.476
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ZP_08035892    3 SILVLTAv-EISPFAFESLDAe--GESAFSLACKRGAQLPDCDAVfiftdkesepliktavdqNEYTkplDIQVMTENTP 79  Treponema phage...
ZP_10010435    3 ALVVLFD--QENKYQEEKAFEgksGRELCTAFFEKAQFLPAGIDT------------------VGLD---FVKKGDCKTG 59  Treponema sp. JC4
ZP_09890299    3 NIVVLFAgfELGRSVRNRYL----GSSAIRLCVEWGARHSSSRTFilstkgntdtifslisssEALSs-vEFVERDFWDA 77  Treponema sacch...
ZP_09260542    7 AVVFYLKe-DLITVKGNVDQAn--QLLYLELTLKKLSSVLKGIPVysnrkigs--adeskktsNQLEy-sDFIIIESGSE 80  Leptospira lice...
ZP_09659003    4 RVILCL---ETPPVLHEELLAs--SVRRLGDFIHALSN-KPELDIlcnvsaasqaerlatainEKIGp-vNVRSYSGPIA 76  Leptonema illin...
WP_013701375   4 NLVFLYId-ENSAHAFEKVFS---EKSCFEKCLEWAADVSSLCGIvvacfeenkntvetfassFDKAk-iKVVSKNFWNT 78  Treponema succi...
WP_002679625   3 SFAVLSAy-DISEYSFKKLEN---GIIPFEASFRAAAAFPDCKKVviltsasceapivsilknIKSDe-lKIEWKVK--- 74  Treponema denti...
WP_014455719   4 PVIICIDatRMSRYADRPIVD---GQSPMSLVFRSADMLRQAVGAssvvt--------lvddtTPGDrpaSHEYRRDWNE 72  Spirochaeta afr...
WP_011671554   7 HSAVFLSp-ETTSLLESASE----GENLLFLSLRKLSKVLPESTVffnawp-------fpkriNTYNf-lNIRILEDPSE 73  Leptospira borg...
WP_012387219  11 FAVVYLDs-PTLTFLESNF-----DVNLVDSFLKKLHKVFPNINIhmnvskpiksmleagsqtKF-----FEFYESIPSE 79  Leptospira biflexa
ZP_08035892   80 SEFFLQVSRI-------------Cs---------TCD---AVFVARADAPFLDLRAAAKLYQQHFDYIAEYSFADGYPEG 134 Treponema phage...
ZP_10010435   60 SQLLAKIHQL-------------Ake-------kNAD---FVIYSYADLPFLNVELTKKIITSHVEYKCEYTFADGFPYG 116 Treponema sp. JC4
ZP_09890299   78 RTVASCVSEC-------------Cek-------aGAK---CALFAFIDQPFMSDSLAGKMLGVHADNLAEYTFADGFPGG 134 Treponema sacch...
ZP_09260542   81 AEFFSKICDR-------------LpdsrtgdpewDET---CFLVFDGFAPMLDPALTEELVLRHEKYLAQYSYSENLPSG 144 Leptospira lice...
ZP_09659003   77 IALHGCIS--------------------------ADE---VAVVFPGIVPFLDVRQGMQMLERHLKFRTHYSYSDTAVPG 127 Leptonema illin...
WP_013701375  79 AILIEEMLAQv-----------sCf---------SAD---DVVYSSADRPFLDRELTSELLESHRKYISEYTFADGYPYG 135 Treponema succi...
WP_002679625  75 --VLEKISPQavfeeaakeaeaeSs---------GFE---NVFFLHGDEPFIDLNATEKLFKQHLEYRAEYSFADGYPEG 140 Treponema denti...
WP_014455719  73 HDLVETLTSC-------------Sa---------GFDrhgSIVLLRGDAPFQLIDESQLLLQQHQQYFAHYSFCDGYPAG 130 Spirochaeta afr...
WP_011671554  74 ISFVKKISSE-------------LpqsrtgdpdwDDA---SFFYFTGLFPCLDENLSLEIYRRHDLYLSQYSYSENLPSG 137 Leptospira borg...
WP_012387219  80 IEFIKQIGSL-------------LpesvfkdpewDEV---CFLYFTGISPILDPKLTEKIWNRHKNFFSQYSYSENIPPG 143 Leptospira biflexa
ZP_08035892  135 LVPQILTPGLFPILAELVKE-----AYIPLSGNFIFESIKKDINSFDLETLIAPDDLRHLRLDFYANSKEGFLLCRSFTD 209 Treponema phage...
ZP_10010435  117 FAPEVIDCGALGILAELSKTsqaeeGEKAVCRETIWNLLKTDINSFEVEAELSDTDWRLLRLKFDCGNKDDFLQCKALYQ 196 Treponema sp. JC4
ZP_09890299  135 IAGEVIDSGAASLIASLAEG-----KEIPASRTMFMDIMKGDINSFEIETVLSEVDFRRYRLLFESSSAGGEASCAALCP 209 Treponema sacch...
ZP_09260542  145 IVPRILSREFVRSLPNGYAG-------------GTQDFLAKNINQFDTEIFYTSPDLRQWRLDFSANNPRSFRLLSSFLK 211 Leptospira lice...
ZP_09659003  128 FLFDIVSGDLFTDMPPEGMQ--------QPTIEALRAFCFRNIQDVDIDLHYATPDLRAYRLRLDCLDARSADRALRVYR 199 Leptonema illin...
WP_013701375 136 FSPEIINSGTLKILSAFASEthkelGELPVSNECIFNVMKADINSFEIESVIAPKDFRMLRFDFSCSQKRNFVACQKLYT 215 Treponema succi...
WP_002679625 141 LIPEILTSGLCPILAKLSEN------ETSFERSFIFDTIKKEINSYDIETMIAPFDLRHLRLRFAADSKRNALLCSRFTG 214 Treponema denti...
WP_014455719 131 CTPEIISCDALPLLQGLATD---------AGFRSLFALVERDINAFDIETRISPTDYRLLRLELRGDTRRNHLLCSRIAG 201 Spirochaeta afr...
WP_011671554 138 IIPTILSREFTNGIPEAANT-------------SVQEYLGKNINHYDVEIFYHDPDLRQYRLDFSLKNKRSLNLVRGFLK 204 Leptospira borg...
WP_012387219 144 LIPTVITREFLTSLPDHLTT-----D--------IHSFFLKNINQYDVDIFFQSPDLRQLRLDFRFNSPRSKMLIQGLQK 210 Leptospira biflexa
ZP_08035892  210 I---------------NGENYATLISERGECLRLIPAYYSIELVNFHPLRSLYRPNIfpq-----------nlDSNCLMK 263 Treponema phage...
ZP_10010435  197 AakeagltreegvsssDVEEFSKIASENVLALKTVPGFYNIQIQGQRDTKPLYEPDF----------------GCKAQMT 260 Treponema sp. JC4
ZP_09890299  210 Vlpgs-------fregRAEDIGLAALSCADSVRTLPFFFDVQITSRSNHVTLCSPPPalgv------------ggfPDMD 270 Treponema sacch...
ZP_09260542  212 Eke-----------nwKYDEIQSFLISRPEIFRSAPSYYEVELYRGCEYECNFCPRQnlk-----------peNDNIILD 269 Leptospira lice...
ZP_09659003  200 Kyp-----------dlVHEQLSDVVRSEADLCGRQPSYLEIELTTEQAVQPTVYPT-----------------TEKHSLD 251 Leptonema illin...
WP_013701375 216 Nalkn-------eiplTAKSLSELAENCTEVHQTLPAFYNIQISENCLANPFYNPYPkafknkfgffpfekenPNPKDMT 288 Treponema succi...
WP_002679625 215 I---------------NAENYAELIEEKKAELFTLPAYYGIEINSSYPLKSIYKPNEvl------------glTEKKEMD 267 Treponema denti...
WP_014455719 202 Rlyqtg-----ditppTAARLCEVLDTEQQLFRTLPASLNWILHGAASRPACYMPQVvsgp---------dapLLSGAAD 267 Spirochaeta afr...
WP_011671554 205 Ske-----------ewNYSDIHPWIQRHPEVFRTGPSYLELEVYRGCELSCSFCPRQfss-----------ndQDGSFLS 262 Leptospira borg...
WP_012387219 211 Iae-----------dvPYENLLSILKQNPELYRSFPSYLEWEIYKGCELACVFCPREfid-----------ksNDGSFVS 268 Leptospira biflexa
ZP_08035892  264 KEPLFALVKKIA-A-F--SEKAVISLSVFGEPSLHPDIVEIIQEILSYPQ---L-SVLIETSGLGWKHETIQDIAR---V 332 Treponema phage...
ZP_10010435  261 YENFAVLCKKIS-E-F--SENAVLNLSFAGEALLHPDFLKIAEEVLKYQG---L-SLFIETSALSLTDQIIEGLKA---L 329 Treponema sp. JC4
ZP_09890299  271 IGKFRALVRAAS-E-M--NPDAVFSLSCFGEPLLHPSFIDFARAVLSEN----L-RLLVETDGI-LVGGLAEKIRG---L 337 Treponema sacch...
ZP_09260542  270 PQVLDKLLSQAE-N-L--GLPYNVCFGGLGEPTLHPNFPELVQKTLAFANl--K-ELFIESALYSDLSGFIKLLSS---L 339 Leptospira lice...
ZP_09659003  252 EEQASLILKSLR-A-FrlENDVTVCLGGRGDPFAYAGLDDFVAALSAIDVv--K-ALYIETPGVGLTRSRLDSLVAawnL 326 Leptonema illin...
WP_013701375 289 LEKFNFLVEQIS-S-F--SEDAVIGLSAWGEPLLNKNFSEFVEIVLRYKN---L-SVLVETDGILVTEQLASKIFE---I 357 Treponema succi...
WP_002679625 268 KAALFSLIEKIA-E-Y--SDDAVISLSVFGEPSMYQDCLSVIEKILSFPK---L-SVLIETCGLYWPSSFIERVEK---V 336 Treponema denti...
WP_014455719 268 PALVLQSVREFA-E-L--AGDGTVVLSHVGEPAEYPAVAEVIRGCVDL-G---L-RVVVETDGIGWDTAMLQTLAG---Q 335 Spirochaeta afr...
WP_011671554 263 PAFLENLLKQQE-EsF--SNEYGVCFGGLGEPLLHPEFTKLLSTVFQISSpllQ-ELFIETALYTDLNSTLDFLNT---L 335 Leptospira borg...
WP_012387219 269 LDVTKQIINRFQnE-L--TSPITISLSGNGEPLLHPNFVAIVKEILTLSQ---LkELIIETALYKNVDQLFSLIND---L 339 Leptospira biflexa
ZP_08035892  333 ANAAAGrk--pfN------IAWIVFLDAISSAMYAKIHRLPIqeanekLKIAATFTDEIHKLFP-QC-VWAQTFRMNENE 402 Treponema phage...
ZP_10010435  330 YEKSPSstngyqK------LMVAVQLDAVSAPLYAKMTGGSEa----dFSKALNGVQKLCGEFP-GM-VYPQFVRTNHNE 397 Treponema sp. JC4
ZP_09890299  338 SEFRD-------R------MDWIVDIDAAGAKTYAAVRNAPEg----dFEKAVGAVSVLSGMFP-SR-VYPQFTRMDANE 398 Treponema sacch...
ZP_09260542  340 KEEEKN------K------ISLIVNLTTRDKKAYSELYGRDN------LAKVLQNLSAVSQVLPkSS-IHLQFLKIREVD 400 Leptospira lice...
ZP_09659003  327 SERSGGsqrspsL------MTLIVRLPSLKQAQYRRWMGVDR------LNDVLSFLDSICANPVaIN-VCAEMIRLPENE 393 Leptonema illin...
WP_013701375 358 SERAGKrkngaeN------VTWIVSIDSFSEDMYNKIFSNGN------FNSAVNSILALNKFFP-TS-VYPQFTRMNENE 423 Treponema succi...
WP_002679625 337 IASAPE------RknkmlpVYWIVCIDAVSSGMYAKVHGLSEdeanikLKQALTFTDSLKKVFP-DA-VWAQIMRIKENE 408 Treponema denti...
WP_014455719 336 LEQQNK------Rq----lLTWIVFLDANEPALYAQIRPDGS------LEAALAGYAALEAAFP-EA-VYVQAMRMQQNE 397 Spirochaeta afr...
WP_011671554 336 DSSFRQ------K------ITWIVNLTTRNQEKYNSLYGKKV------LSRVFSNLEQLGNIFP-KNrIYLQFLKIQETE 396 Leptospira borg...
WP_012387219 340 DPKLKE------K------LCIITNVTTLKEDTYQSLYGKNE------LSQVLESIDSLSKILP-QNsLYVQMIKMKEVE 400 Leptospira biflexa
ZP_08035892  403 EELEPFFKFWKEQ----I----GQVIIQKYNPLCNKLPDRRVADLSPLDRHPCWHLKRDMTVLTDGTVPLCREd------ 468 Treponema phage...
ZP_10010435  398 EELEAFFRFWNEKanpsG----GNCIIQKYNNFSGLLADSKPADLSPVERNVCWHLRRDLTILADGSVFACPNmaaaaaa 473 Treponema sp. JC4
ZP_09890299  399 HELESFFRFWKDSsspsG----GKVIIKKFDSLCASLPDRKPADLSPLVRNACWHLARDFVVLADGSVVPCRGc------ 468 Treponema sacch...
ZP_09260542  401 AELDSWYEQAQKE----G----YEIILQKYNSYSDTLPQRRASDLTPLGRDFCWHISRDLYLNADGEVSICKQtp----- 467 Leptospira lice...
ZP_09659003  394 EELDGFMKRFPAD----K----VRPLIGKYSRFGDALPALDVVDLSPLNRDYCRHLAFDFFINAKGEMPVCRQ------- 458 Leptonema illin...
WP_013701375 424 DELEKFYRFWHSK----NspsvGKVIIQKYNDFCKLLPSRKPADLSPLERNVCWHLKRDMTILCTGDVPLCRQ------- 492 Treponema succi...
WP_002679625 409 IEVEPFYRFWKNL----G----VNVIIQKYDTFCKLLEDKRVADLSPFNRHPCWHLKRDMYILADGSVPLCKEd------ 474 Treponema denti...
WP_014455719 398 HHLLDFYRHWKQH----T----ERIIVQKYHTFAGRLPPQQAADTSPIRRLPCWRLKREITLLPDASMSMCHVd------ 463 Spirochaeta afr...
WP_011671554 397 NEVEVWVDETEKQ----G----YGVILQKYNRYAGLMPEKRVTDLTPIQREFCWHLNRDLYVNSDGTVSICKQt------ 462 Leptospira borg...
WP_012387219 401 DEIDPYFTFFEKK----G----IQIILQKYNRFAGKLPERRVSDLTPIHRDFCWHLIRDIYLSVSGEVSICKQ------- 465 Leptospira biflexa
ZP_08035892  469 iD--TSLILGNAFSEELAEIWKRAEPIYKEHLHADY---KGICKYCDEYYTYNF 517 Treponema phagedenis F0421
ZP_10010435  474 gKevQGGFLGNVFERSLEEIWKKSDQMILEYINKKY---CEICRACDEYYTFNF 524 Treponema sp. JC4
ZP_09890299  469 -G--ASACVGNVFSEDVGEIWARGKELFAEHLSGKF---RGRCGGCDEYYTFNF 516 Treponema saccharophilum DSM 2985
ZP_09260542  468 gS--KKHSIGNINKESLEQIWAKGNPFFTSSAKGAHgsiPAPCISCDEWYTFNA 519 Leptospira licerasiae serovar Varillal st...
ZP_09659003  459 ----KLSGGPTLRESDLLSVFESRRNLHLSWMKGEYesvLPQCASCDDWYFFNA 508 Leptonema illini DSM 21528
WP_013701375 493 -F--LFSSIGNVFDEGVENIWKKYFDEIKNQLEKKY---GEKCKDCDEYYTFNF 540 Treponema succinifaciens
WP_002679625 475 vK--RNNILGNAFSDSLDSIRKKAFEAYKKHLECKY---GDLCGACDEYYTYNF 523 Treponema denticola
WP_014455719 464 lF--APHVFGRIGDRPLAEMWEQHAEMYHLHLQQDY---PGQCAKCDEYYTFTF 512 Spirochaeta africana
WP_011671554 463 ----PGKVFGNLHKETLMQIWQKGLSSFADSLNGKHettGAPCLNCDEWYTFNA 512 Leptospira borgpetersenii
WP_012387219 466 -N--QTEMIGNLLSESLSEVWKKGLDSFRHSFNGEHdliPAPCLNCDEWYTFNA 516 Leptospira biflexa
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