Conserved Protein Domain Family
rSAM_Geo_metal

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TIGR04311: rSAM_Geo_metal 
putative metalloenzyme radical SAM/SPASM domain maturase
This model describes a family of radical SAM/SPASM enzymes largely from the deltaproteobacteria. The family is most closely related to radical SAM enzyme family regularly in archaea in the vicinity of tungsten-containing oxidoreductases. A single member of the family in archaea may correspond to multiple tungsten enzymes, e.g. five in Pyrococcus furiosus. Therefore, the lack of a conserved gene neighborhood for members of this family in deltaprotebacteria suggests members may be involved in the maturation of multiple metalloenzymes.
Statistics
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PSSM-Id: 275116
Aligned: 12 rows
Threshold Bit Score: 695.994
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
REF_jgi:Pcar_2884  20 YPSKLFVEITTFCNLRCPMCVKQSADSNIIDGDMTEETFSALEPAFPRLEALLLNGIGEALMHPHLLDFIHRARRAMPEK 99  Pelobacter...
ZP_01312674        20 LPSKLFVETTTFCNLSCPMCVKHAEGSTIEEGHLTQATFDALKPAFSHLEALFLNGIGEPLLHPQLASFIAQARAEMATD 99  Desulfurom...
ZP_08866851         5 FPARLYVEVTTRCNLRCRMCVKQAEGCRIPEGDMPLAVFDRLASCLPHLDALVLNGVGEPLLHPDLPAMVRLARRHMRPD 84  Desulfovib...
ZP_08110370        19 FPSRLQVEVTTRCNMRCAMCVKSAPDSDIPETDLDLDAFRRLEPALARCEALVLNGIGEPLLNPDLPDMAAFARSVMPAS 98  Desulfovib...
ZP_08421371        18 LPSKFFVECTTRCNLRCAMCVKQTKGCEIIEADMPLAMFERLLPAMAQADALVLNGVGESLLHPELPRMVALARQAMPQS 97  Desulfovib...
WP_011940397       23 YPSKLFVEATTRCNLGCFMCVKQTDGCGMTEGDLTPGIFAAVEPALPHLEALILNGIGEPLLNPHLAEFIRKAKRLMPAT 102 Geobacter ...
WP_011734779       41 YPSKLFVETTTYCNLKCSMCMKQTMGSELKEGFLTMEIFRGLDPAFPRAESLVMSGIGEPLLCRELEDFIRHARARMPRD 120 Pelobacter...
WP_012612992       20 YPRKLFVEVTSRCNLHCRMCVKHSSDIRAPEGDMTAETYAALLPAMPHLNGLVLNGVGEPLLHRDLETFIRLARQHMPPE 99  Desulfovib...
WP_015751396       15 sPKRIVLEPTTRCNLACRMCVKQSGEQAICEGDMPPATFAHLASVLPQAEAVTFSGIGEPLLHPRLEELIAQAQTLLPQT 94  Desulfohal...
WP_012645366       24 YPSRLFVETTSRCNLSCVMCMKQNDGGTGDG-DLDMGTFSALEPALPNLNALVLNGVGEPLLNSRLEQFITRAKKLMPSH 102 Geobacter ...
WP_015861431       25 HPSRLFVEVTSRCNLRCAMCVKHSGHGVQAEGDMSPETFRALEPAFPHLDALVLNGIGEPLLHPRLEAFIQTAKQAMPST 104 Desulfovib...
WP_015853022       20 YPAQLQVEVTTRCNMNCSMCVKYAPESDISETDLSFEDFKKLGPALEHCEKLVLNGIGEPLLHPDLAAMASFARERMPER 99  Desulfovib...
REF_jgi:Pcar_2884 100 SWIGFQSNGLLLDERWARDLVASGLDRLCLSVDGV-KP----DTF--SKVREGEDLDDMEQAFAFLAAAr---KRQPDTR 169 Pelobacter...
ZP_01312674       100 AWIGFQSNGLLFTPENAQQILDAGANRICLSIDSL-SP----ALF--KKIRQGGQVGAVQRAFATLNEAr---RHTTTAN 169 Desulfurom...
ZP_08866851        85 ADIGFQTNGLPLTPDMARALTDGGVDRVCLSVDAL-ATtareELP--GCLHGGMDAGSVARAMDMLRAAa---RGRARP- 157 Desulfovib...
ZP_08110370        99 GWIGFQTNGLLVTESLAHRLVESGVDTFCVSVDTL-EM----GLAagGELHGMTGAARLERAFRLLRRAg---ERYGRS- 169 Desulfovib...
ZP_08421371        98 GWIGFQSNGLLLTRERAQALLLAGLDRLCLSVDSC-SP----ETL--RQVRAGAELKGLERALAVLREAqaatRPEGSRR 170 Desulfovib...
WP_011940397      103 GWIGFQSNGLLLTNLRAISLVEAGLDRICLSMDAA-SP----ETF--RKVREGSDIPDIEHAMAALNAAk---ERCNRPE 172 Geobacter ...
WP_011734779      121 SWIGFQSNGLLLDEERAVSLMEAGLDRICLSVDSV-SP----ETF--STVREGGELGDIDRAFAALASAr---ERCGRPD 190 Pelobacter...
WP_012612992      100 GWVGFQTNGHLLTESRAHALLAAGLDRICLSIDAV-SP----ELF--STCRAGGDVDHMERALANLATAr---AARPGAP 169 Desulfovib...
WP_015751396       95 AQIGMQSNGVLMTPQRARSLLQAGLSRICLSVDGS-SP----ELF--SRIRRGGQLGDLEQAFAILDRAr---RESGRS- 163 Desulfohal...
WP_012645366      103 GWIGFQSNGLLLTNMRAMTLLDAGLDRICLSMDGV-DS----TTF--GSIRTGSQLLDLQWAFEALAAAr---TVCGRHD 172 Geobacter ...
WP_015861431      105 GWVGFQTNGHLLTRARATSLFAAGLDRIFLSVDAA-SQ----ELF--QAVRAGGSLGHVERALAALAEAr---KDHPGHK 174 Desulfovib...
WP_015853022      100 GSIGFQTNGLLFTDQRARELVDAGVDTFCVSVDSLdSS----ATE--GELHGQSSTDRLARTFSLLNQA----AQESGTK 169 Desulfovib...
REF_jgi:Pcar_2884 170 LKVGVEFVLMEENKQQLLDTLRWVAARGADFMLVTQASAYDNSAMEQLAYDNSTDEAVKIFTYWRDKIADMGLDVRDY-N 248 Pelobacter...
ZP_01312674       170 VKLGMELVVVQENVQELPELIRWAAKQGVDFALVTQMLPYDARYCDNVAYDINTDAAIAIFERGCQTARQQGIDLVAWlH 249 Desulfurom...
ZP_08866851       158 LRLGVEFVLMRDNAEELPGVVRWAAARGAEFCIVTHVLPYDAAAAAQSLFVPDTDEARAFFDRRAADAARLGLDLRRYfD 237 Desulfovib...
ZP_08110370       170 LRLGLEFVLMRDTADQLPLVVRWAGEIGLDFAIVSHVLPYDQAMQDQSLFNPNTPAATALFEKWQARAAEQGLDLHDQqG 249 Desulfovib...
ZP_08421371       171 FEAGVEVVVSGETLDGLPELIEWVADRGASFVLASQLLPYDRSAAQGSLFGASPDACLEFFAPWRSKAIEQGLDLSRFlA 250 Desulfovib...
WP_011940397      173 VRVGIEFVLMRSNLGELPAALRWAAEHGATFAVVTHVLPYDDQHADEAAYGSCSAAAIALFGSYRAIAAQQGLDIYRYfE 252 Geobacter ...
WP_011734779      191 FRIGIEFVIMRDNLHELPSTLRWAASRGADFAITSHLLPYDPAFVKDAAYEPNTEDAIRLFESWRKRAEAEGIDMSDYfK 270 Pelobacter...
WP_012612992      170 LAVGVEFVVMRDNLNELPATLRWAAERGADFAIVSHVLPYAPGMSEQAVFGTNTEESMRFYREWQARAEREGIDIRRYfD 249 Desulfovib...
WP_015751396      164 LQLGAQYVLQRDNVEQLPAAVEWAAGQGVDFFLVTHLLPYGEAALSQSLFPLSTDASRALFQRKRREAEQQGLDLFHYfQ 243 Desulfohal...
WP_012645366      173 LEIGVEFVVMRDNIRELPPALEWAAARGASFAIVSHLHPFHEPHLEQCAYDTCTDEAIQIFQTWKSKADTIGVDMLSYfR 252 Geobacter ...
WP_015861431      175 LEVGAEFVVMRDNLAELPGLVSWLAARGATTLVVSHLLPFSAALVTQPVFGVNTRRAKAYYQECQDRAKAQGLALDQYfR 254 Desulfovib...
WP_015853022      170 IRLGAEFVLMSDTYRQLPDVLRWAAGQGVEFILCSHVLAYHRSMQEQSLFNPNTPAAVEIFDKWKSIARERGQDLQNYfD 249 Desulfovib...
REF_jgi:Pcar_2884 249 SRW-EMGRflpgldPKLARMMELVDQMRADARKKDVFLDLPRLLERG----ADKAEQLQALFDEAELLAKDLGVELSLPA 323 Pelobacter...
ZP_01312674       250 NTW-TRQK------PGDDFVRQLIQQMKSQARDQGVFFNLTTLTTRS----REQQHQVSEHFERARQTAQACGIELSLPS 318 Desulfurom...
ZP_08866851       238 VVW-KFAKs-----PEEKALVDFVLHMRQDAAEQGISLHVKRLVNGM----DAPVPDLGPLFEAARAAAAETGMDLRLPR 307 Desulfovib...
ZP_08110370       250 VAW-KFVKs-----DREKRLLELVKGLLAEAEASGVWVHLPHLLEWDrrnlDGAERDLAHRFRQAGDAALRAGLELRLPP 323 Desulfovib...
ZP_08421371       251 AYF-TFLRs-----EQDVRLIRFVEAMAAEAERKGIPLHLPNLVIED----LGKLDRVRDTFARAEQAAVRRGVRLTLPA 320 Desulfovib...
WP_011940397      253 ARW-KYRRn-----PDEQKLVAVIEAMKAEADARDIFVDMKKLLQLD----TRRIEDVVAVFAQARAVALECGLDLRLPE 322 Geobacter ...
WP_011734779      271 TAFlRYSRt-----PEQDRMVDFVRRMMDDARGRDIFLNVESLLQRD----PGWYARVESTFAEARAIATEQGLELRLPA 341 Pelobacter...
WP_012612992      250 VVW-RFRFt-----EEETRITSFIREMTEAAREADVPLHLHNLLRDA----DAHVPEAEAVFDAARAVAREHGLHLRLPA 319 Desulfovib...
WP_015751396      244 VRW-KYNKs-----SAEKRLVRFVEDMVQEAANQGIALNLGLLLQEA----DIAVDEVESSFVRAEQRAAQCGVELSLPA 313 Desulfohal...
WP_012645366      253 ILW-KYAKt-----ADEQQVVDFVDAMKTDAGDRGITLDLKRLFAMD----YSQIGVTMAVFDEAMRVARRVGLDLRLPE 322 Geobacter ...
WP_015861431      255 IVW-KYHKt-----PQEQALADFVQQMLFDAVKQDIPFQVTNIITGE----DLAL--VEDVFRRAETVAESHGLRLVLPP 322 Desulfovib...
WP_015853022      250 FVW-TPGRs-----MKREQLFDLIREMRAEAERRNVWINLRSLADWDqrnqTEEYQKLREIYACSEKLAEELGVELHLPP 323 Desulfovib...
REF_jgi:Pcar_2884 324 AVPRFERKCDFVEDGGAFISWDGAVHPCYFLWHQFRCFINDWDRLIKPKIFGNV---NQRPLLDIWNDVTFRSFRENVHA 400 Pelobacter...
ZP_01312674       319 LTATQQRHCAFVEDGGAFISWDGNLHPCYNLWHNYRCFLNGWENRIATRQFGNV---TQQGLEALWNRPDFVQFRRNVLD 395 Desulfurom...
ZP_08866851       308 TGPSVERRCDFVEDGAAFVTADGSAHPCYFLWHRYACFLDGEPKQVFPRTFGSL---ADATLEELWNGAEWREFRDEVRA 384 Desulfovib...
ZP_08110370       324 LKARDERRCHFVEDGTAFVTSQGDVSPCQFLWHQYACHLDGGKKVVRPWLFGNI---RERDLVDIWRGASYADFRRQVLE 400 Desulfovib...
ZP_08421371       321 VSPRLDRRCDFMEDGGVFITASGDVTPCYFLWHGYSCFLDGALKRVRPKIFGNV---RERELQDIWNGREFEAFRREVLE 397 Desulfovib...
WP_011940397      323 VTLREKRHCSFVEDGGAFISWEGNVSPCYFLWHRYRCFASGWHQQVQPKVFGNL---AEQGMLEIWNDPAFRSFREQVVD 399 Geobacter ...
WP_011734779      342 VAPRSDRACDFLEGGSVFVSWDGKVHPCYFLWHKYVCYFTERKKHVSTKSFGSL---TEEGIMEIWNAPPFRQFREEVLR 418 Pelobacter...
WP_012612992      320 LHPRNLRHCPAVDEGGAFIAWDGKVAPCYFLWRDYHCHMYGMRKQVVGRFFGTVgpaQGQDILDVWNGPEYRAFRDRVTA 399 Desulfovib...
WP_015751396      314 LAPTFQRHCAFVEDGCTFIAWDGSVHPCYYLWHTYSTWRKGQRKPIQAKVFGHV---DREDLKAVWNCPEYRSFRKQVVS 390 Desulfohal...
WP_012645366      323 VVRREKRGCAFVEQGGAFVSWDGKMHPCYHLWHRCQSFANGWLHPIKPRSFGNV---SQRGILEIWNSCEFRTFRENVLH 399 Geobacter ...
WP_015861431      323 VQPVSGHACLGVKKGGMFVAWDGKVSPCHFLWRSFSCYFYGREKQVAHKVFGDM---TRQSLAAVWNSPAYRAFREDVMR 399 Desulfovib...
WP_015853022      324 LMAENELRCLFIEDGVSFITSKGEVSPCQFLWHSCTCFLDGSEKLLRQKKFGNI---AEVDIDEIWSSLPYKAFRAEVLE 400 Desulfovib...
REF_jgi:Pcar_2884 401 FDYPYCSNCGVAPCDLL--QEEDFEFDCYTHPEPCGACQWAMGLFQCL 446 Pelobacter carbinolicus DSM 2380
ZP_01312674       396 YDYPFCSCCTVAPCDYI--DNEAFEEDCYLRSEPCGTCLWAMGLLQCL 441 Desulfuromonas acetoxidans DSM 684
ZP_08866851       385 YRYPDCTNCPTGPCDDItgAMGEFDIDCHGVAVPCGHCPWCLGGVQCL 432 Desulfovibrio sp. A2
ZP_08110370       401 YEYPYCSNCPFVPCDDIkgAPFDFDCDCLGATIPCGHCLWCMGGLQCL 448 Desulfovibrio desulfuricans ND132
ZP_08421371       398 YAYPHCGSCTAAPCADIl-GEQAFEYDCHGVEVPCGHCPWCSGGFHCL 444 Desulfovibrio africanus str. Walvis Bay
WP_011940397      400 YDYPDCSSCTLAPCDYV--QTERFEQDCHIRDIPCGACLWCMGIFQCL 445 Geobacter uraniireducens
WP_011734779      419 HDYPFCANCNLIPCEYL--YCEEFEQDCYTNTVPCGDCFWCMGLFNCM 464 Pelobacter propionicus
WP_012612992      400 KGYPFCTNCNVYPCDDI--ETTTFETDCYGEPVPCGDCPWCLGLLQCM 445 Desulfovibrio vulgaris
WP_015751396      391 YEYPYCWECTFFPCNMV--DTDAFETDCYTLEVPCGDCPWGQGIVQCL 436 Desulfohalobium retbaense
WP_012645366      400 HDYPSCSGCNCSPCDLV--QKDEFERDCYVNTEPCGSCLWSSGVFRCL 445 Geobacter daltonii
WP_015861431      400 RRYPHCPSCNVYPCEDI--NSLDFENDCYGETVPCGDCLWSMGLLQCM 445 Desulfovibrio magneticus
WP_015853022      401 YEYPYCSNCPMVPCDDIigRSNEFEVDCLGVEVPCGHCPWAMGGLKCL 448 Desulfovibrio salexigens
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