Conserved Protein Domain Family
geo_PqqD_fam

TIGR04302: geo_PqqD_fam

GeoRSP system PqqD family protein

Members of this PqqD-related family so far occur only in the genus Geobacter, always together with a PqqE-like radical SAM domain/SPASM domain protein and a second SPASM domain protein with traces of a degenerate radical SAM domain. The extended gene region includes a high-molecular-weight cytochrome c family protein. Besides authentic PqqD (TIGR03859), another example of a PqqD family protein occurs in the SynChlorMet cassette, again with two PqqE-like proteins. The system is named GeoRSP for its prevalence in Geobacter, its Radical SAM protein, is SPASM domain protein, and its PqqD family protein.

Links

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Source:	tigr
Taxonomy:	Geobacter

Protein:	Representatives
	Specific Protein
	Related Protein
	Related Structure
	Architectures
Superfamily:	cl05126

Statistics

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PSSM-Id:	213915
Aligned:	3 rows
Threshold Bit Score:	175.037
Created:	9-Oct-2014
Updated:	25-Oct-2021

Structure

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Sequence Alignment

include consensus sequence

Format: Row Display: Color Bits: Type Selection:

YP_383533      1 MKTIHRNPNVMWREEADALARVQEAMDRGEEVEETGTSVLFSGGTMLSLNFLGTEIWKLCDGRALDGIVAELLPQFEVDE 80  Geobacter metal...
WP_012648424   1 MKKVFRNPDVMWREEEDSLLEASAGLEKGNDVTEVGTSLLFSDGIMITLNLMGTEIWKICDGRTVEEIIDSLLADFEVER 80  Geobacter daltonii
WP_011938663   1 MSKIYRNPDVMWREEDESREQANAALEKGENAEDIGTSLLFSDGMMVTLNVLGTEIWKMCDGREVDEIVAELLTQFDVEA 80  Geobacter urani...

YP_383533     81 AVLREDVRAFLDELAAKGFVSH 102 Geobacter metallireducens GS-15
WP_012648424  81 AVLSQDVHSFLQDLEQKGFIFY 102 Geobacter daltonii
WP_011938663  81 DVLKNDVAGFLEELAEKGFIHY 102 Geobacter uraniireducens

Citing CDD

Jiyao W et al.(2023). "The conserved domain database in 2023.", Nucleic Acids Res. 51(D1):D384-D388.

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