Conserved Protein Domain Family
B12_rSAM_oligo

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TIGR04295: B12_rSAM_oligo 
B12-binding domain/radical SAM domain protein, rhizo-twelve system
A variety of bacteria, including multiple species of Bradyrhizobium, Mesorhizobium, and Methylobacterium, have a typically twelve-gene cassette (hence the designation rhizo-twelve) for the biosynthesis of some unknown oligosaccaride. This family is a B12-binding domain/radical SAM domain protein found in roughly have of these cassettes, but nowhere else.
Statistics
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PSSM-Id: 275111
Aligned: 6 rows
Threshold Bit Score: 763.941
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012239381   2 RFALVNPAWSFEGSIYFGCREPHLPLEYGYARALLEAAGHEATLVDAQARGLTDGALRDEVAALRADTIVVTTAPSYLFW 81  Sorangium cellu...
WP_011684759   2 RFSLVNPPWSFTGSIYFGCREPHLPLEYGYARNLLENAGHTVQLVDGQLESLSLDEMRRRVADIRPDFTVVTTAPSYLFW 81  Candidatus Soli...
WP_011925145   3 RVALINPNWTFDGSIYFGCRSPHLPIELGISEHLLRQAGHATLLLDAHMFDLSPSDILAELAAFRPDMIVLTTAPTYLFW 82  Bradyrhizobium ...
WP_015927187   2 RISLVNPTWTFTQSIYFGCREPHLPIELGACKVLLEAAGHDVLMLDGALDGLSLEELADRVADFRPAMTVVTTAPTYLFW 81  Methylobacteriu...
WP_011524296   2 KYAFVNPKWSFTGSTYFGCRDPHYPLELLFAAQKVENAGHAPLLVDAQNDDLALEEVKRRVAEFEPDFLVIPSAPSYLFW 81  Candidatus Kori...
WP_012241547   2 KVALVNPPWTFHGSVYLGCREPHLPIELGYARALLERAGHEAALIDAQARGIDLIALRAEVAALRPAMTVIATAPSYLSW 81  Sorangium cellu...
WP_012239381  82 RCAPPELRVPQQALRALHGLPGLRLAVGPHASTTPRATLRKLGVDAVVMGECEDVLVELADRprsrWGEIDAIAWLE-GD 160 Sorangium cellu...
WP_011684759  82 RCAPPELRVPRETIDALRDVGGTMIGVGPHASTTPKTALRKLGADAVVLGECEEVLPRLVGD----WRYVDSLCYRR-GD 156 Candidatus Soli...
WP_011925145  83 RCAPPELRVPQELVMTLRESGAVLVAVGPHGSTTPRMTLRKLRVDVVVMGECEHSIVRLANG----ERDFAGICFKAaNG 158 Bradyrhizobium ...
WP_015927187  82 RCAQPELRVPRAFLDALGERGGRTVVVGPHGSVTPETALTKLGCDFVVRGECEEVVAALASGglerPDRVPALAYRD-GL 160 Methylobacteriu...
WP_011524296  82 RCPPPELRVPMDYFRAI-ETSATKVCIGPHASATPAAVLRKTGADIVIKGEPEQAIFELATKp---WEQIDGVCYRR-GD 156 Candidatus Kori...
WP_012241547  82 RSPPPELRVPMATAAALRGHGGLLVAVGPHGSATPRAALRKLGVDVVVLGECEEILVMLAGAtesrFWQIPSIAYRR-NG 160 Sorangium cellu...
WP_012239381 161 -EARVQGGPRASDMARLPALRWDEATVARHAHHHHRFDTAPIGPGAEVEASRGCPYHCTFCAKDNFRDGYRKRPLDVLLD 239 Sorangium cellu...
WP_011684759 157 -AVSVNGGPHASDMTTLSALHWNSELIGRHAHHHHRFDSPQYGAGAEMETSRGCPYHCTFCAKDNFRNRFRRRPLATIAE 235 Candidatus Soli...
WP_011925145 159 -DVTVHGGPQAAMFTDQPALQWPAEMIRRHHHHHHRFEATPVGPGAEVEGSRGCPYHCTFCAKDHFRNGYRKRPSAVILD 237 Bradyrhizobium ...
WP_015927187 161 -EITVTGGPAAARFADLPALSWPEAWIARHHHHHHRFDRAPDGPGAEVEASRGCPYTCTFCAKIDFRDKYRRRDLTIILE 239 Methylobacteriu...
WP_011524296 157 gSLHISPTLAVVDMKTLTALDFSNYSIERHAHRHHVF--FGEGRGAELEFARGCPWNCYFCNKQLFRNKFRERPVDAILS 234 Candidatus Kori...
WP_012241547 161 -IDHVQGGPYAACLRTLPALRWDGATIARHVHHHHRFDAVPEGPSAEMETSRGSPCRCASCARDGARDRLRKRPLATVLE 239 Sorangium cellu...
WP_012239381 240 EIDGLVAQGVRYVYFIDEIF---LPDRPLLEALADRPVSFGVQMRVDNWSREMLDLLGRAGCVSIEAGVESVTREGRSLL 316 Sorangium cellu...
WP_011684759 236 ELDGLIAAGAGYVYFIDEIF---LPYRDVLETIRERKIVFGIQTRIDLWNEEMIDLLGDAGCVSIEAGVESITEAGRELL 312 Candidatus Soli...
WP_011925145 238 EVDRLRTQGVEYVYFIDEIF---LPNAELLQGLVARGLKFGVQTRIDLWKPEMLELLGRAGCVSIEAGIESLTPEGRAAL 314 Bradyrhizobium ...
WP_015927187 240 EIDRLIAQGVTYLYFIDEIF---LPQKPLLEALVGRAVSFGVQTRIDLWKPDMLDLLGAAGCVSIEAGVESLTEEGRALL 316 Methylobacteriu...
WP_011524296 235 EIDAVIARGVNYVYFIDEIFgvgKNVRMLLEEISKRNVSIGFQTRIDLWDEDSLDLLGRAHCISMECGIESITEEGREEL 314 Candidatus Kori...
WP_012241547 240 ELDALLAEGVRHVYFIDERF---LPDRTLLEEIWARDIVFGVQLRIDSWSREMLDLLGRAGCVSIEASVDRPSIEGMDAL 316 Sorangium cellu...
WP_012239381 317 AKRCRLSTEQLGDLLIHAKKS--VPFVQANLIQSPTDDPADVAAFRERLRQHGVWANEPVPMFPYPGSPEYTMRWG-TPD 393 Sorangium cellu...
WP_011684759 313 DKKCKIGTEEIGERLIHAKRR--VSFVQANLLDSRDDDPADVQKWRQHLQANGVWANEPVPLFPYPGSPDYTRRWG-APD 389 Candidatus Soli...
WP_011925145 315 AKNCRMTTEQLADRLIEARRH--VPFVQANLIEMPQDDDPVVQRWRQRMQGAGVWANDPVPLYPYPGSPDYQKLWG-VPD 391 Bradyrhizobium ...
WP_015927187 317 DKNCRVSTDDLAERLIHARRS--VPFVQANLIKVAGDDPALVAAWRERLQAAGVWANDPVPLYPYPSSPDYRRLWG-EPD 393 Methylobacteriu...
WP_011524296 315 NKNCRMTTERITELLIYAKEKagIPWVQANLILTDKDDKNEIHRWQDNLKSHGVWVSEPVPMFPFPGSPLYSQTFGaAPD 394 Candidatus Kori...
WP_012241547 317 ARRCSASTEELTALLVHARRS--VPFVQANLSDAGSGDPAETASWRQRLLGLGVWANEPVPAFPYPGSPAYTRRWG-APD 393 Sorangium cellu...
WP_012239381 394 DEAWERSVAHYLDHFER--FSDLQDSRPLPLSALE 426 Sorangium cellulosum
WP_011684759 390 DLAWERAHRSYLEAFDT--FSDIQEQRPEPLVQLE 422 Candidatus Solibacter usitatus
WP_011925145 392 DQSWERAHTHYLELFSK--FSDVQNERPIPLAALE 424 Bradyrhizobium sp. ORS 278
WP_015927187 394 GRAWERAHAHYLAEFDR--FSDIQDERPAPLTELE 426 Methylobacterium nodulans
WP_011524296 395 DNAWERAHSHYMSQFREgdWSDIQEQLPRSIAELE 429 Candidatus Koribacter versatilis
WP_012241547 394 DGAWERAHAHYIAEHRT--FGDLPDSRPLPLTELE 426 Sorangium cellulosum
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