Conserved Protein Domain Family
beta_prop_Msarc

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TIGR04275: beta_prop_Msarc 
beta propeller repeat, Methanosarcina surface protein type
This model describes a repeat region found mostly in cell surface proteins of various methanogens. Methanosarcina barkeri, for example, has twenty such proteins, often with either seven or fourteen repeats. These repeats resemble the beta propeller repeats of the TolB periplasmic protein of Gram-negative bacteria, part of a complex associated with various functions including biopolymer transport (see TIGR02800).
Statistics
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PSSM-Id: 275097
Aligned: 89 rows
Threshold Bit Score: 35.5243
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011020537  430 TQITSDELEqSFPVIYGDIITWQEFGAyGDSNVYMYDLST 469  Methanosarcina acetivorans
WP_011307785  872 TRITTNGLSfAESAIYGDKVVWTGNIN-GKSNIYMCIISe 910  Methanosarcina barkeri
WP_011020533  188 ITVTSYGDPnI-PRIWGTNVIWSDVYN-HQGYIEMYNTST 225  Methanosarcina acetivorans
WP_011020318  200 IDVSQY-GDnMFSHIYGDKVIWSDFYT-RLGNIRMYDLAT 237  Methanosarcina acetivorans
WP_011308606  192 ITVSHA-SQiFSPHIYGNKVIWSNFYS-RDGFIEMYDLIT 229  Methanosarcina barkeri
WP_011308069  193 ITVSPYSGSiQIPHMYGNKVIWVDNYI-GSGYIGMYDVVT 231  Methanosarcina barkeri
WP_011021734   67 TELNSSST--SHPAVYGDKVVWLDNST-ENPNLCVYNIST 103  Methanosarcina acetivorans
WP_011307786  736 TLISNQLGI--YPAIYGDKIAWQGECN-GDC-IYMYDVSS 771  Methanosarcina barkeri
WP_011308070   28 IQITPYGERgLNPAIYDNKIAWLDKYI--NGSLHLRDLST 65   Methanosarcina barkeri
WP_011021314   28 IRITSYDESgFNPAIYDDKVVWA---T-G--YIYMRDLST 61   Methanosarcina acetivorans
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