Conserved Protein Domain Family
orph_peri_GRRM

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TIGR04262: orph_peri_GRRM 
extracellular substrate-binding orphan protein, GRRM family
This subfamily belongs to bacterial extracellular solute-binding protein family 3 (pfam00497). In that family, most members are ABC transporter periplasmic substrate-binding proteins. However, members of the present subfamily are orphans in the sense of being adjacent to neither ABC transporter ATP-binding proteins or permease subunits. Instead, most members are encoded next to the two signature proteins of the proposed Glycine-Rich Repeat Modification (GRRM) system, a radical SAM/SPASM protein GrrM (TIGR04261) and the Gly-rich repeat protein itself GrrA (TIGR04260).
Statistics
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PSSM-Id: 275088
Aligned: 10 rows
Threshold Bit Score: 394.42
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ZP_01122830   51 GKLRAVVIGNALPM-VKKDGDNYDGLSFVVLEAIRDQLNVSALKkdkE---IDIEPVAVGSAQEGLNKIRSGAADIACGV 126 Synechococcus s...
ZP_01081207   44 GQLRAVVIGDELPM-VRKTDTGFDGLSFVVLEAIRDQLNAEQGEgqaA---VTLTTANAADVESGLEMIRSGKADIACGV 119 Synechococcus s...
ZP_01122833   22 GQLRAVVVGEELPL-ATKTDAGYDGLSFVFLEAIRDQLIHTDGE---K---IAIQTVPVTNVREALSLLEQGKADLACGM 94  Synechococcus s...
WP_011620273  44 GKLRAVVVDDVLPM-VDKKDGKYEGLSFVVLDAIRDQLKSAPEN---KsddIVIEPVSIKSAQDGLNKIRSGEADIACGV 119 Synechococcus s...
WP_011130885  45 GKLNAVVIGDELPF-ASKSDAGFKGLAINVVAAVKNELQAFAGK---P---IRLNALQVNSVQDAKDALLSGKADIACGV 117 Prochlorococcus...
WP_012594795  35 GVLTAGSRLNLIPYsYFNDKEELDGYSLAVLNLIREDLEKQLGK---P---IKLEIIEAQDISERIPKLMSGDIDISCDT 108 Cyanothece sp. ...
WP_012629018  35 GVLSVGTRLGMLPYaYIDDRQQLVGLSVDLTNLIKEEIQQELGR---P---VTIQVQVIDNPNDYFRNLGMGTIDIACSA 108 Cyanothece sp. ...
WP_012627577  35 GVITMGGRVDIIPFsYLNDKKELVGYSQDVADLIAAEVSAYVGK---P---VAIQFQQVNNFSELLPKVENGQIDLACNT 108 Cyanothece sp. ...
WP_011359412  33 TSLKAVIFEDVKPL-YQKSGDTYEGFGVDMLNLIKDQAG--------R---RTLKFIPTTSAEDGMKAITSGKADIACGV 100 Synechococcus s...
WP_011365022  29 TTLKAVIFEEVKPL-YQKTDSAYEGLGVDVLEQIRIQA-----K---R---RKVDYRVAKSVNEGIGAVITGKADIACGV 96  Synechococcus s...
ZP_01122830  127 AFSWKRQRTLTYTLPFAMGGVRVLAPKG-N--DGTPDSLNGQTVGVVKDSVAANVLASSVDDASFQFFDTPDEALAALKD 203 Synechococcus s...
ZP_01081207  120 GFSWERQKQFDYTLPFASSGIRLLAPTT-I--DGTPQSLEGQTIGVVANSVAASVLANNVENASFQSFATPAEALKALKK 196 Synechococcus s...
ZP_01122833   95 DFSWERQTRVDYTLPFATTGIRLLVPKG-N--DGTPNSLKGKTIGVVQDSVAASVLANNLEAATFQFFPSPAAALEALKD 171 Synechococcus s...
WP_011620273 120 AFTWERQRTLTYSLPFATSGTRVLAPKG-N--DGTPDSLKGKTIGVVKDTAAAAVLAKSVDDAQFQFFATPTEALAGLKD 196 Synechococcus s...
WP_011130885 118 AYSWERAMLVDYTIPFALGGVRVLAPTG-N--DGTPASLAGKTVGVIKDTVAAQTLATAAPQANYVSYDSPAAALAAMRS 194 Prochlorococcus...
WP_012594795 109 VFTWERDKFVDFSLSYGVSGVRLLVPKN-St-LGTPESLEGKRVAIIPHTVIGDTIKLVQPKATLIPVNNFTEGIEALKA 186 Cyanothece sp. ...
WP_012629018 109 QFTWQRAQFVDFSIPYSISGIRLLLKRD-SqlSGTVESLAGQRVGVVPNSMGEVVMKAIQPKAVLVPVQGADEGIADLQS 187 Cyanothece sp. ...
WP_012627577 109 QFTWGRSMFVDYSVPYSLSGIRLLVKKGaI--KGTPESLVGKRVGVLPNSLGEAMIKVVQPQAVLVPITGIDEGIDDLIA 186 Cyanothece sp. ...
WP_011359412 101 AFDWGRAEKVSYTIPFAIGGTRLLTKTT-I--NGTPSSLRGRTVGVVKDSSSAKILETVVPSASLQAYATPAEAFAAYDS 177 Synechococcus s...
WP_011365022  97 AFTWGRSTKVSYSLPFGVGGTRLLMASD-TtvDGTPASLEGQTIGVVKDTASAQVLRNVVPGATLKNFTTPKEALDAFYA 175 Synechococcus s...
ZP_01122830  204 GTVKVLGGDSLWLKANQAATAPEA-ALVPALPYARSGIGCVVAGTTPKLLNMSNLAIGRLLSAYVNDNDEVRTEINRWIG 282 Synechococcus s...
ZP_01081207  197 GDVKLLAGDSLWLRANQNEAAPND-VIVPAVPYARAAIGCIVGESSSSLLDTSNIAIGRLLQAYVDGNPEARKEINAWIG 275 Synechococcus s...
ZP_01122833  172 GTISILGGDSLWLQASRKAAAPKD-NLVPDQPYARTAVACVVPEGHESLLDASNIAIGRVLQDYVDGDQAVRKEINSWIG 250 Synechococcus s...
WP_011620273 197 GTIEFLGGDTLWLKASRKDTAPDA-DLVPTFPYARSSVGCVIADTTPHLLNYSNLAIGRMLTAYVDDNKDVRTAVNKWIG 275 Synechococcus s...
WP_011130885 195 GSVDILGGDSLWLKANKARVAANA-DIVPIVPYGRSGVGCIIPENNSTMLNYSNIAIGKILQGYVNDVAPVQTMVNRWIG 273 Prochlorococcus...
WP_012594795 187 GKVDAIAGDSIILDGERQRLKSDNyQLVPEDPYARYGIACMVPEGNSTFLNLVNYSIAKLMQGYLIGDPKYQEIINRWIG 266 Cyanothece sp. ...
WP_012629018 188 GKIAAIAGDSLILAGNALKANPNGfRLTPTQPYARYGIACIVPENNSTFLNLVNRAIAKLMQGYIIGDQKSVALIDQWVG 267 Cyanothece sp. ...
WP_012627577 187 GKVDAIAGDSNILAGNIQRVSGSDyHLAPDQPFARYAVGCIVPPDNSKFRSLVNIAIAKMLQGYVVGDAKYTAIVNKWLG 266 Cyanothece sp. ...
WP_011359412 178 GKISTLAGGTLWLAANSDAKNS---DLVPIRPYGRTGIGCIVKQNNGKLLAAANNAIGQTMQEYVNGNAATREMVNRWIG 254 Synechococcus s...
WP_011365022 176 GEISILGGGTLWLAANSRIDKT---ALLPFRPYGRSGISCIVNQNNGKLLSSTNIALGQMMQAYMDGDAGTRRMINRWIG 252 Synechococcus s...
ZP_01122830  283 TGSTLGL-SDDQIGSFFTIVLSTAAEFNK 310 Synechococcus sp. WH 7805
ZP_01081207  276 QGSAIGL-TDRQIGHYYRMVLSTAAEFQP 303 Synechococcus sp. RS9917
ZP_01122833  251 SGSDVGL-NDDDIAHYYSVVLATVTGFRK 278 Synechococcus sp. WH 7805
WP_011620273 276 PDSQVGL-SENMIGDFFTIVLATTAELSK 303 Synechococcus sp. CC9311
WP_011130885 274 PGSAVNL-NQDLIKAYYATVLSTAAQLSL 301 Prochlorococcus marinus
WP_012594795 267 PEGVVTIvKPEAIKDFFEYTIITREQVPL 295 Cyanothece sp. PCC 8801
WP_012629018 268 PNGLVPL-PPELIRSYFETVIMSHEQIPL 295 Cyanothece sp. PCC 7425
WP_012627577 267 PQGILEL-PPALIKDYFRMVLLNYEQVPI 294 Cyanothece sp. PCC 7425
WP_011359412 255 PGSNVML-PESVITALYSLLLSTTSEMSV 282 Synechococcus sp. CC9902
WP_011365022 253 PGSDVGL-SQDVIRSLYGLILSITAEINT 280 Synechococcus sp. CC9605
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