Conserved Protein Domain Family
SCM_rSAM_ScmF

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TIGR04251: SCM_rSAM_ScmF 
SynChlorMet cassette radical SAM/SPASM protein ScmF
A biosynthesis cassette found in Syntrophobacter fumaroxidans MPOB, Chlorobium limicola DSM 245, Methanocella paludicola SANAE, and delta proteobacterium NaphS2 contains two PqqE-like radical SAM/SPASM domain proteins, a PqqD homolog, and a conserved hypothetical protein. These components suggest modification of a ribosomally produced peptide precursor, but the precursor has not been identified. Of the two PqqE homologs of the cassette, this family is the more distant in sequence.
Statistics
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PSSM-Id: 211974
Aligned: 3 rows
Threshold Bit Score: 670.008
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012466814  10 HPLHTIYFYLTEGCNLKCRHCWIDPKYQGEGEQHPSLDPSLFRKIIREAIPLGLTSVRLTGGEPLLHPAIGELLDCIGEN 89  Chlorobium limi...
WP_012899635   9 YPLNQIYFYLTEGCNLHCRHCWIAPKYQDSKHTYPSLPFNLFQSIIKQARPLGLAAVKLTGGEPLMHPDINNILELIKQE 88  Methanocella pa...
WP_011699048  11 HPLRQLYFYLTEGCNLCCRHCWIGPKHLSAADRPTGLDVRLVRSIIDQAKPLGLSGVKLTGGEPLLHPGILDILEILRAG 90  Syntrophobacter...
WP_012466814  90 GLQLSVETNGLLCSPQTAQDLRrSCETVFVSVSLDGVDAATHDWMRRVKGAFDKAVRGIHNLVEAGIHPQLIMTITRRNV 169 Chlorobium limi...
WP_012899635  89 NLGLGIETNGVFCTPDVSRRIA-ECNAPFVSVSLDGVNADTHEWVRGVKGCFNDTISGIKNLVETGVSPQIIMTVMRHNK 167 Methanocella pa...
WP_011699048  91 NLPVNVETNGTLCTPELARALA-GCSSPSVAVSLDAPDAETHDWMRGVRGAFASALKGIRNMVGAGLKPQIIMSVVRRNR 169 Syntrophobacter...
WP_012466814 170 GQVEQIVRMAESIGAESVKFNHLQPTSRGSKMYENGEALSIGELVALGEWMERTLIPSTALRIDPGHPVAFRPLGRIFGN 249 Chlorobium limi...
WP_012899635 168 GQMEEMIRLAETLGASSVKFNIVQPTARGKHLHNSGETLSIEELIHIGEWVENILSSSTSLKIFFGHPPAFRPLARMFGE 247 Methanocella pa...
WP_011699048 170 DGMRALVHLAESLGAASVKFNLVQPSVRGEQMHRAGETLPVPELVELGKWAESALAAEARVRIHFSHPPAFMPLSRMFAE 249 Syntrophobacter...
WP_012466814 250 KPGECGLCGIFGVLGVLAGGKYALCGIGEHIPELVFGNAGSDDLDSVWSENPVLNDIRNGMPHRLQGICGECLFREKCLG 329 Chlorobium limi...
WP_012899635 248 NSNGCGICGIKGIIGVLSDGSYALCGIGESIPEMVFGNATKDRLSDVWNNTLTLKEIREKIPGHLEGVCKGCLMKNICLG 327 Methanocella pa...
WP_011699048 250 EGAGCGTCGILSILGVLSDGSYALCGIGESVADLVFGHAGEDRLEAVWRTSPVLRELRAGLPGRLEGVCARCLMKHVCLG 329 Syntrophobacter...
WP_012466814 330 SCIAQNYYAKRHLWAPFWYCQQAYEAGLFPSARL 363 Chlorobium limicola
WP_012899635 328 SCIAQNYYRTSSLWSPFWYCEESLKLNMFPGSRL 361 Methanocella paludicola
WP_011699048 330 SCIAQNYYISGNLWSSNWFCEEAKARGVFPESRL 363 Syntrophobacter fumaroxidans
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