Conserved Protein Domain Family
SCM_rSAM_ScmE

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TIGR04250: SCM_rSAM_ScmE 
SynChlorMet cassette radical SAM/SPASM protein ScmE
A biosynthesis cassette found in Syntrophobacter fumaroxidans MPOB, Chlorobium limicola DSM 245, Methanocella paludicola SANAE, and delta proteobacterium NaphS2 contains two PqqE-like radical SAM/SPASM domain proteins, a PqqD homolog, and a conserved hypothetical protein. These components suggest modification of a ribosomally produced peptide precursor, but the precursor has not been identified. Of the two PqqE homologs of the cassette, this family is the closer in sequence.
Statistics
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PSSM-Id: 211973
Aligned: 3 rows
Threshold Bit Score: 675.034
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012466815   9 TPRSVDIDITNRCNLRCRHCYYYSSDAETPTELETAEWLRFFRELNECSVLRVVLAGGEPFMREDFRELIDGIVKNRMRF 88  Chlorobium limi...
WP_012899636   6 SPRSVDIEITGKCNLRCLYCSHFTSASDISNDLPKEEWLEFFKGLNRCSVMDVTLSGGEPFCRSDIREIIEGIILNRMRF 85  Methanocella pa...
WP_011699049   3 TPKSMDISITGECNLRCAYCSHFSSAGEVARDLGTGEWLRFFEELNRCAVLGVCLSGGEPFRRSDFDEILRGIVRNRMRF 82  Syntrophobacter...
WP_012466815  89 GILSNGTLVTDAIASFLAATRRCDYVQVSIDGSTPGIHDRLRGTGSFLQAVRGIELLRKHAINVVVRVTVTRWNIDDLRP 168 Chlorobium limi...
WP_012899636  86 SILTNGTLITDELAAFLSSTRRCKTVQVSIDGSIPSTHDVFRGEGNFMRAMEGVKLLRAHDVPVSIRVTIHRGNVGDLDN 165 Methanocella pa...
WP_011699049  83 SILSNGTLIDEDTAVSIAATGRCDSIQVSVDGSRPETHDICRGPGTFQKALEAIRALRRHNIPVTARVTIHKHNVHDLES 162 Syntrophobacter...
WP_012466815 169 LAAFLLDDLGFPAFSTNAASHLGLCRSHTDDVQLDTADRTKAMQILVELEKEYPGRITADAGPYADAKTFASMEQARIDQ 248 Chlorobium limi...
WP_012899636 166 IAKLLLEDLGLPEFSTNAASYMGLCRKNKKQVQLTADEYMLAMESLLRLNKKYDGRISASAGPLSDARRWAGMEEALSKG 245 Methanocella pa...
WP_011699049 163 IARLLLDTLSLPGFSTNAASYMGLCRHNAEHLQLSVEERSLAMETLLTLAAGHPGRVSASAGPLAEARQWLEMERARQNR 242 Syntrophobacter...
WP_012466815 249 QGNMPGRGTLSGCGCIFMSLAVRADGVIVPCNMLSHIELGRINRDSLRDLWQNNPVLLQMRNRVTIPLTDFEFCKDCDYR 328 Chlorobium limi...
WP_012899636 246 ERSIPDRGYLTGCNGPLEKFAVRPDGVIVPCLQLSHMELGHINRDSLLEIWQHHPKLTMLRERHTIPLSQFEFCNRCKYI 325 Methanocella pa...
WP_011699049 243 APGFPGAGYLRSCGGVFARLAVRADGVIVPCSQMSHIELGRINRDDLREVWRGHPELERLRRRREVPLGEFSFCRGCEYI 322 Syntrophobacter...
WP_012466815 329 NFCTGNCPALAYTTFGLIDHPSPDACLKRFLEEGGRLP 366 Chlorobium limicola
WP_012899636 326 PYCTGNCPALAYTLTGEVNHPSPEGCLRRFIEEGGRVA 363 Methanocella paludicola
WP_011699049 323 PYCRGNCPALAYTILGEENHPSPDACLRRFLESGGRLP 360 Syntrophobacter fumaroxidans
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