Conserved Protein Domain Family
nodulat_NodB
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TIGR04243: nodulat_NodB 
chitooligosaccharide deacetylase NodB
Nodulation factors are lipooligosaccharide signalling molecules produced by rhizobia, the symbiotic nitrogen-fixing bacteria that form nodules in plants. These Nod factor sustems have the NodABC genes in common but differ subtly in what they produce, which affects host range. NodB is a chitooligosaccharide deacetylase.
Links
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Statistics
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PSSM-Id: 211966
Aligned: 8 rows
Threshold Bit Score: 326.285
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
ZP_06477304   82 SRDIFLTFDDEPNPFCTPQVLDVLAEHRVVATFCVIGEYAAKHPELIRRIATEGHGLANHTMTHRDLSRCEPGEVRREIS 161 Frankia symbion...
ZP_06476967   17 TRRIALTFDDGPDPYYTPRILDLLAEHKVAATFCVLGTYAAAHPDIISRIAAESHLLACHSMTHADLSCCGEQQTRWEIM 96  Frankia symbion...
WP_012406750  36 SRQVYLTFDDGPDLVWTPKILDVLAQHQVPATFCVLGAYAASHPQLIERIIAEGHEIANHTMTHRDLSKCEQEQTRREIL 115 Burkholderia ph...
WP_011654222  20 ARCVYLTFDDGPNPFCTPQILDVLAEHRVPATFFAIGSYVKDHPELIRRLVAEGHDVANHTMTHPDLATCDPKDVKREID 99  Rhizobium legum...
WP_010875356  17 APSVYLTFDDGPNPVFTPEVLDVLAEHRVPATFFVIGAYAKDRPQLIRRMVAQGHEVANHTMTHPDLSACGRRDVERQVL 96  Sinorhizobium f...
WP_011084823  20 SRAVHLTFDDGPNPFCTPEVLDVLAQHRVPATFFVIGTYATEHPELIRRMIAEGHEVANHTMTHPDLSRCGPTELHDEVL 99  Bradyrhizobium
WP_012354666  28 PRKVFLTFDDGPNPTWTPKILDILRQFHVPGTFFVLGAYAAEHPELIRRMISDGHEVANHTMTHLDLSQCNRDVLRREIL 107 Cupriavidus tai...
WP_012172340  14 QSSIYITFDDGPHPSVTPAVCEILREHSALATFFQIGRFAKEYPSISRQCQLDGHAIGNHTFDHPNLQDRAGEEVEYQIS 93  Azorhizobium ca...

ZP_06477304  162 DANKVIRTVCPQACVHYLRAPYGAWTGEA-RAAALFGLEPLNWSVDPRDWSRPGANVIVETVLTCIRPGGVILLRGGCPA 240 Frankia symbion...
ZP_06476967   97 AASRTLQAVAPTARVQYLRTPYGRWNDGArRVAAELGLQPLGWTIDSRDWSAPGVTEIMDALRQQLHPGGIVLLHDGCLP 176 Frankia symbion...
WP_012406750 116 EANAIFKRTCPAATVRYMRAPYGIWTKEViAESTKAGLTALHWSIDPRDWSRPGVDAIVHAVLASAQPGSIVLLHDGSPP 195 Burkholderia ph...
WP_011654222 100 EAHQAIVSACPQALVRHLRAPYGVWTEDVlSASVRAGLGAVHWSADPRDWSCPGVDVIVDEVLAAARPGAIVLLHDGCPP 179 Rhizobium legum...
WP_010875356  97 EANRAIRMACPEASVRHIRAPYGIWSDDVlTTSANAGLAAVHWSVDPRDWSRPGIDAIVDAVLASVRPGSIILLHDGCPP 176 Sinorhizobium f...
WP_011084823 100 TASEAIRLACPLASPRHMRAPYGIWTRDVlAVAASAGLTALHWSVDPRDWSRPGVDAIVNSVLANVRPGAIVLLHDGYPP 179 Bradyrhizobium
WP_012354666 108 DTNVIITKASPGLAVRFLRAPYGIWTPEVcVEGMNAGLTPLHWSVDPQDWARPGVDLIVDTVLATVEPGAIVLLHDGSPP 187 Cupriavidus tai...
WP_012172340  94 SAQKCLEHICGRGFVRHFRAPYGAWSTQIlNVVNKIGLRPVSWSVDPRDWEAPRIENLINEILDNARPGSIILLHDGCPP 173 Azorhizobium ca...

ZP_06477304  241 DEWPSGSrTGLRERTVIALRRLIPALHEYGFV-----FQPLP 277 Frankia symbiont of Datisca glomerata
ZP_06476967  177 ERKRGCS-AGHQDQTLAVVPLLIRELRHQGLVpgpplLEALP 217 Frankia symbiont of Datisca glomerata
WP_012406750 196 GEWDSNArTTSRDQTVTALSRLIPALKERRFV-----ISSLP 232 Burkholderia phymatum
WP_011654222 180 DEVEQCSlAGLRDQTLIALSRIIPALHSRGFE-----IRSLP 216 Rhizobium leguminosarum
WP_010875356 177 DELANTD-ASFRDQTVAALSRLIPALHDRGFI-----IRSLP 212 Sinorhizobium fredii
WP_011084823 180 DEEGLPSgSTLRDQTRTALAYLIPALQRRGFV-----IRPLP 216 Bradyrhizobium
WP_012354666 188 NELASRPyTASREQTVRALPRLISALKERNFV-----ISSLP 224 Cupriavidus taiwanensis
WP_012172340 174 DEAAMWDvRGGRAQTLAALRYVVPALQARGFA-----LQPLP 210 Azorhizobium caulinodans
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