1W9Z


Conserved Protein Domain Family
seadorna_VP9

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TIGR04237: seadorna_VP9 
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seadornavirus/coltivirus VP9 protein
This model, broader than related pfam08978, describes proteins VP9 in Coltivirus, and proteins with various designations in the seadornavirus group: VP9 in Banna virus, VP10 in Liao ning virus, and VP11 in Kadipiro virus.
Statistics
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PSSM-Id: 211960
Aligned: 5 rows
Threshold Bit Score: 303.051
Created: 9-Oct-2014
Updated: 11-Oct-2014
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1W9Z_A      1 MLSETELRALKKLSTTTSRVVGDSTL-ALPSNVKLSKGEVEKIAVTKKEMFDELAQCNL------PTIELITREHTFNGD 73  Banna virus
AAC72054    1 MISDAVVRGFKRLALETERTAGEQTK-ELGSKVKLSKGEVEYLAVTKDELLEGLRQCNL------KKVEQLNLDATFNGN 73  Banna virus
NP_694463   1 MSSLKEHRTNKANSRNLIRSPDEAPP---TDNSLLNKGEILALTFSDEYIKSKLLLGPKlqglppPSLPPNSYGYHCNGS 77  Kadipiro virus
YP_460035   1 MSNVTEIRALKRFARQINRPADKQTVnDLPGNSTVSKDEVLTLAYSDGSVKRLLGRGAD------GSILGNVNVFHMNGD 74  Liao ning virus
ACA03544    1 MLSETELRALKKLSTTTTRVVGDSTL-ALPSNVKLSKGEVEKISVTKKEMFDKLAQCNL------PTVELITREHTFNGD 73  Banna virus
1W9Z_A     74 VIRFAAWl-FLMNGQKLMIANNVAVRMGMQYATNLAGNNVKITYVTSNNVVKLGHIAAGVlANPYSNKGSGLFITYEHNL 152 Banna virus
AAC72054   74 LARAGAYk-FIKHSMLIFMTRPIAVSNNEKYSTDVAGIPRSTTNVMVGERMIMKTVPRGT-GSPWSGQCASLIITNGISL 151 Banna virus
NP_694463  78 FATYLLResLINVRHIFAHCAP---NLNNSVATNVAKSAVAAT-IASGTVEQLRYCQLGSlGGDLPDRSSTLMVLYECDV 153 Kadipiro virus
YP_460035  75 FFRSMYLaaFISHPGL--HNRPFMCRANLGYVVNHLNSAVIASGAPRSATVNL---------GAIPNSGASFVVLVDQLL 143 Liao ning virus
ACA03544   74 VIRFVAWa-FLMSGQKLMTANNVVVRMGMQYSTNLAGNNVKITNVASNNVVKLGYITAGVlAAPYSNKGSGLFITYEQNL 152 Banna virus
1W9Z_A    153 ISNQI--ETGKVCVLFiTSLS-TTASSTNSFAYSACSVPIEDWDFNMIKLTAETSCAsltamtnlvnslvpgerTRPVGL 229 Banna virus
AAC72054  152 HDSVV--IPGSIYVLF-QTSL-TTYNKSNSYAYSYCVIPHSKWDPKKIKLTSETSCPslnsmqslansilegdrAPVTGL 227 Banna virus
NP_694463 154 AGSTTsdDFGKINIIY-QTCT-SSVSSTLSWRISKVSMPITSYISKCLYVTNTDLVP-----------------MPGINL 214 Kadipiro virus
YP_460035 144 NGVA---DVGFVNMYF-HSNNrPLGDTTASYSVQHIRAQTTLFNPVNVMFDSLSLAV-----------------TPESGY 202 Liao ning virus
ACA03544  153 ITNTI--ETGKVCVLF-VTSLsTTASSTNSFAYSWCNVPIEKWDFNMIKLTAETSCDsltemtnrintlvlgdrVRPVGL 229 Banna virus
1W9Z_A    230 YVDIPGVTvttsassgSLPLTTIPAVT----PLIFSAYTKQVEEVGVINTLYALSY 281 Banna virus
AAC72054  228 YVDIEGVTvstsnslsTLPITNVANNY----PICFEACVRYVEQVSEINLLYTLAY 279 Banna virus
NP_694463 215 SITTSDVT--------SKFIIKPPFNT----KVLFFCCVRDREHTTLINDLFALTN 258 Kadipiro virus
YP_460035 203 TIEVD-------------PVHTGPFTYndnlKVHCYVAVKDRYDVGVLSTVWSAMS 245 Liao ning virus
ACA03544  230 HVDIPGVTvttsaslaTLPITTIPATT----PLIFSAYIKQVEEVGIINTLYSLSY 281 Banna virus
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