2WZA,4OFQ


Conserved Protein Domain Family
isopep_sspB_C2

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TIGR04228: isopep_sspB_C2 
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adhesin isopeptide-forming domain, sspB-C2 type
This domain has a conserved Lys (position 3 in seed alignment) and Asn at 177 that form an intramolecular isopeptide bond. The Asp (or Glu) at position 59
Statistics
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PSSM-Id: 275068
Aligned: 37 rows
Threshold Bit Score: 114.318
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2WZA_A         41 PTKVNKN-----KEGLNIDGKEVLAGSTNYYELTWDLDQykgdkSSKEAIQNGFYYVDDYPEEALDVRPDLVKVAD-EKG 114  Streptococcus...
KFN88938     1092 PTKTVTD-----KAGSDIDGKTVFDKDVT-FHLITDYSTyvntvVDVNTMTKAAGIYDDTDDATVNPDVAKATVTD-SNG 1164 Streptococcus...
WP_012576932  888 PVKKDTQa----DPSISIDGKTALLGDRIYYRVTIDAKQ-----TNQAYKVWRLGMTDDWDDEYLSLDAKRIEVTDtATG 958  Bifidobacteri...
KFI50718     1206 PSKKDNQskeqgDPSVSIDGKTMLLGDTGNYVVTLDLKQ-----TNNAYRVWKAGITDDFDDEHLAIDGTKIEVLD-SKG 1279 Bifidobacteri...
WP_007054331 1015 PSKQDTQk----DPTINIDGKTALLGDKVYYRVNIDASRl----TDTAYKVWRLGMVDDYDQEYLTLDAKHVEILD-ETG 1085 Bifidobacteri...
WP_003810515  723 PKKKDVSs---kDRTVSIDGKTLLLGDTGNYILTLDAKDls--kdSTAYKVQRLGLVDDYDEEYLDIDQTKIEVLD-STG 796  Bifidobacteri...
WP_004110491 1200 PKKRVTQsrkqgDPKITIDGKILLQGDTGYYQVLLDLKQ-----KDNAYRVYKAGITDDYDERYLDVNSKDIQVFD-DHG 1273 Gardnerella v...
WP_009993957  598 PEKKDET-----KTGINIDGKTAYVGDDIYYRLTLSAATl----kDTAYKVHRLGMIDDYDDEYLQLNDKNIEILD-AAG 667  Gardnerella v...
WP_011679866  469 PHKSETD-----DSGKDNNGQNVKPGQTLKYKLTWDLKGleaidVDKDTLAKGLSFMDDYDETKLD-------ITD-QTK 535  Leuconostoc m...
WP_007053496  762 PSKKDTQskeqgDPTVSIDGKTMLLGDTGHYTIDLDATQ-----KDQAYKVWRLGLTDDFDDEYVSIDPSRIEITG-DDG 835  Bifidobacteri...
2WZA_A        115 NQVSG-VSVQQYDSLEAAPKK-VQDLLKKANITVKGAFQlfsADNPEEFYKQYVAT--------------GTSLVITDPM 178  Streptococcus...
KFN88938     1165 NDITAkGTFYDIEAGQPIPAE-IQIFLDGAHLTPNGEFIvwiPNDLKDYYENYVLT--------------GNNVTVNLPV 1229 Streptococcus...
WP_012576932  959 KDVTAkFNIAAIDGVAYVYARtADTKVPATGETIKGDPQ---PKNLKEYAEKKDHDplkepa--idqsmlGTSYEVSLPM 1033 Bifidobacteri...
KFI50718     1280 QDVTGkFNIQIKDGVAYVYAKtVDTWIPKKGVTVKGDPQ---PTDLAAYASSSKHDplsdps--idqnllGQEYRIVMPY 1354 Bifidobacteri...
WP_007054331 1086 RDRTGeFNIQDKDGVLYAFARtVDTQIPATGETVPGDPQ---PDDLKAYSEKSDKDydplkdpsidqsllGHTYQVVMPM 1162 Bifidobacteri...
WP_003810515  797 KDVTAkFNIQLKNGVAYVFAKtVDTEIPATGETVKGDPQ---PADLEEYSTRKLDAtkdpsi---dqdllGQEYQVVLPY 870  Bifidobacteri...
WP_004110491 1274 SDVTArFNVQVKDGVAYVYAKtVDTFIPKLAKSVKGDPQ---PVDLASYAALDKHDplkdpa--idqqllGHAYTIILPF 1348 Gardnerella v...
WP_009993957  668 KDVTNkFNIQVKDGVVYVFAKtVDTEYLGDIL--PGDPQ---PTDLKAYAGKVLDVtkdpai---dqsllGQDYTIVLPM 739  Gardnerella v...
WP_011679866  536 KD----FTVIDAKTQKSVMDE-LQQDWDIKN----GKWTl-kAKNVQDFLTNHA----------------GHEFTITFNP 589  Leuconostoc m...
WP_007053496  836 KDYTNaFNIQVRDGVAYAYAKtVDTEIPATGETVKGDPQ---PADLKAYAGKSDKDhdplkdpaidqsllGQHYAVTLPY 912  Bifidobacteri...
2WZA_A        179 TVKSEFgkTGGKYENKAYQIDFGNGYATEVVVNNVP 214  Streptococcus gordonii
KFN88938     1230 EVIAQP---GEKAENTFVQVEFGNGYQSNLVFVKVP 1262 Streptococcus equinus JB1
WP_012576932 1034 TVIKVT--DGHIVKNKATQVVNDTRKDTNEVANPLK 1067 Bifidobacterium longum
KFI50718     1355 KVVKVE--DGYTVRNKAIQVTNDLTRETNEVSNPLK 1388 Bifidobacterium breve
WP_007054331 1163 TVTKVK--DGHTVENTATQVTNDRRDKTNTVTNPLK 1196 Bifidobacterium longum
WP_003810515  871 KVAKVQ--DGKVVKNKAIQITNDLSRETNEVSNPLK 904  Bifidobacterium adolescentis
WP_004110491 1349 TVKAVK--NHTVVKNTAIQVTNNTRKSTNQVSNPLd 1382 Gardnerella vaginalis
WP_009993957  740 TVKQVK--DGYVVKNTATQITNDRKDVTNTVTNPLK 773  Gardnerella vaginalis
WP_011679866  590 VIKKDA--T-STVTNTAVQKDFGQDFDTETVKNLIT 622  Leuconostoc mesenteroides
WP_007053496  913 TVVKVT--DGYVVKNTAVQIVNNVRKKTNTVSNPLK 946  Bifidobacterium longum
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