4MIW,4I1T,3JSB


Conserved Protein Domain Family
capSnatchArena
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TIGR04202: capSnatchArena 
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RNA endonuclease, cap-snatching, arenavirus family
This model describes a shared signature region from an RNA endonuclease region associated with cap-snatching for mRNA production by RNA viruses. This domain usually is part of a multifunctional protein, the L protein responsible for RNA-dependent RNA polymerase activity. Cap-snatching is a viral alternative to synthesizing a eukaryotic-like mRNA cap itself.
Links
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Statistics
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PSSM-Id: 275049
Aligned: 32 rows
Threshold Bit Score: 52.1979
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
4MIW_A      94 VVPDGYKLTGNVLILLECFVRSSPANFEQKYIEDFKKLEQ----------LKEDLKSVDINLIPLIDGRTS 154  Lassa virus
AAT01932    76 VTPDNYIWDGHLLIILDYKVSVGNDSSE-ITHKKYTS-------------LILPVMSDIGIDTEIAIIRAN 132  Mboke virus
BAF91691    74 CTPDNYIIHNRKLYVLDYKVAVDNESSA-KTFEKYDK-------------IFGDVLVPLGLDYEIVVVRAD 130  Akabane virus
BAJ16526    74 CSPDNYVILNGKLYIIDYKVSVDTTYGQ-ATKTKYEE-------------IFGDALAPFGLDFEVVIIRAD 130  Peaton virus
AEE25825    74 CTPDNYLLHDGKMYIIDFKVSVDDRSSR-ITREKYNE-------------IFGEVFNPEGVDFEIVIIRLD 130  Oropouche virus
AEA02985    73 CTPDNYVVYNNKLYIIDFKVSVDDVSSR-ETMKKYNE-------------IFGEILVPNGIPFEVVIIRFD 129  Leanyer virus
ABQ14448    79 ITPDNYYRDGTKIYIIDFKVSVSDESAQ-HTYKKYDT-------------LFGDVFNQLNIEYEVVIIRMN 135  Caraparu virus
NP_671968   76 ITPDNYLYINNVLYIIDYKVSVSNESSV-ITYDKYYE-------------LTRDISDRLSIPIEIVIVRID 132  La Crosse virus
BAJ14124    94 MTPDNYKITGNLIEFIEVTVTADVARGVREKILKYQGGLEfieqllqveaQKGNRQSGFRIKFDVVAIRTD 164  Puumala virus
ABR24797    94 MTPDNYKITGFTIEIVEVTVTADVDKGIREKKLKYEDGLTfieselrrafHKGEILQPYKIQFSVVAVRTD 164  Seewis virus
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