Conserved Protein Domain Family
TIGR04141

?
TIGR04141: TIGR04141 
sporadically distributed protein, TIGR04141 family
This model describes a sporadically distributed conserved hypothetical protein in which complete members average over 500 amino acids in length, although matching sequences frequently are truncated or broken into tandem ORFs. Regular co-clustering with known markers of mobility (integrases, transposases, phage proteins, restriction enzymes, etc.) suggests this family also is part of the mobilome. The function is unknown.
Statistics
?
PSSM-Id: 275009
Aligned: 32 rows
Threshold Bit Score: 452.862
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
EGB89079        6 FSIFLLK----AGYNAQNSLKPDH------QL------L------DDFQ-AQnlPQGASLFVSDRFKTT-PWW-VNYFSI 60  Escherichia co...
ZP_07373680     7 FSLHLFK----PGTAAVEVLSENFrekltsGE------V------SRMTrLAgsAVEMEGFFTNSFPKE-PMWfSTLRTT 69  Ahrensia sp. R...
ZP_04965842    12 VSVYLLK----KAKSCEALEEIKS------IC------I------KEYA-LDgnVLEGTLYELPVSSYT-PRWrDALTPL 67  Burkholderia p...
ZP_07277988    11 ASLFRLD----GSAAESDLLTPLSa----dQI------T------ADRP-VDlpGTRARLVAGAFRTEA-PHW-LPHAEA 67  Streptomyces s...
BGI:SBI_03801  11 RTLYRLT----GVAPTVDAMFGVLdptrldAV------G------AELDfPGewLGVPALLVTGSFAQPvASW-CGEINR 73  Streptomyces b...
WP_013234872   12 VSIYLLK----ASKVGAAREQIDa------LG------V------GSFP-LTetIPEGRFFALPSEAEP-PKWmAAISNL 67  Herbaspirillum...
WP_012170673    6 FTLFLGK----SDTTDFERVFTEEa-----RAklgrstT------TIIN-CQdfGDGAKLFIFTGEKHV-PDW-LKEVGR 67  Azorhizobium c...
WP_009944174   10 VSLYRLD----GELDLADCLLDSSs----aDD------L------EDHE-VQldEVTCRLVMGRMHSDE-PSW-AAHVNS 66  Saccharopolysp...
WP_011453499    7 YSLYLVK----SDVEDFEDIFSENa-----RD------KikagdaSLSE-SSelGDQAVVYIFPGPPKP-PSW-LSEVTT 68  Jannaschia sp....
WP_011607373   11 sNIYLLRresgQSLTDLVELDENPd-----KR------I------DRYN-LRidDQPALLVHASVSRSQ-ARW-SKSLTA 70  Frankia alni
EGB89079       61 -----DGDLeQESKGALIFLPVRDRYFALTFGH-IYHNLLDVSYEYDFGLKVTLNSLEPKELKSADIVDPGA-SRRKRMQ 133 Escherichia co...
ZP_07373680    70 f---eIPEKkGSSPASIVTFVAKERRFALTFGY-GASLLNDQTKVHDFGILVAMNLLSASGLKTIQRSSLID-AKNSAMQ 144 Ahrensia sp. R...
ZP_04965842    68 ladktNPSLqSQYPGALLWVWRGDKTFLFTFGY-GHTKVKHEWVEPDFGKTVVQAVVPQGQVREVRAEQIFArRHVASER 146 Burkholderia p...
ZP_07277988    68 lg-ggPLDLpSTLPFAVLLVPRPPWTYAVTWGA-GHLVLNDEHVEQGFGLRFGIRRLDPFDLGLVASAALDVsARATQIS 145 Streptomyces s...
BGI:SBI_03801  74 ttgceVSRPvNRSAG-LLMLAVDGEVYAIGYDQ-GFRLVPDRVKDRRFGLGFVIRRVDPAQIRDLVSHTPGG-GRTDITL 150 Streptomyces b...
WP_013234872   68 lpadaTPQLeSQSPGGLLWIPRNGKTFVFTFGH-GHSKIKDEWVEPEFGKIVALAIVPQGQVREVRAEQVFAkRHISSER 146 Herbaspirillum...
WP_012170673   68 hf--sVPNLyTTSAAGVLLFRSSDRIFASTFAH-GWMYLDERCFEGDFGLRAAINALDDKKLRRLERANLGD-ALRAVAL 143 Azorhizobium c...
WP_009944174   67 ltglpV-RLpSSQPFGVLLVPLPPWTYALIWGH-GHRLLDAEVIEQNFGLLFGIRRLDPAHLRTVSRSAMDItARTTQTS 144 Saccharopolysp...
WP_011453499   69 vf-qgIPALtNRSSCAVVVFKYASRIFVTAFAH-GWQYLDDSKIESDFGLMVAINSLDDAKVKRIDSSHLGE-AMKGVSQ 145 Jannaschia sp....
WP_011607373   71 ltgaeIATG-SSNPSAVLLIDLDGPVFALCYGTtGIHMLSQHAIEQGFGLRIAIRVLEAEKIRQLTRLSLDSrARVDRSS 149 Frankia alni
EGB89079      134 VPVMSDLTYLDFDSNSEILKSLTGKVKPQ---YVd----lFK--------NA-------TGSTSLKVGLKIEADELIVLC 191 Escherichia co...
ZP_07373680   145 SVSASTYESFGGLRSFELLKRVAGPVSND---PT------ML--------QA-------VGSSSLSFASKKPLSEVPDVA 200 Ahrensia sp. R...
ZP_04965842   147 APRAAAVREFGFEADRDLVAGMEGVPEGGyteEL------GG--------SV-------SGATAFRF--ELAISKLNETL 203 Burkholderia p...
ZP_07277988   146 IPGGGELSAFRLEPYGDLVHRLAGSADLT---DLt----yGR--------VTgkr-yriRVGTSLWAPLAKDPEAFLADL 209 Streptomyces s...
BGI:SBI_03801 151 VPGGAPVWSLGVQEHAQIVRRLGGRLDGI---ELt----iAQ--------DDrtkissvEGGTGLRMRLGIDAVDLVADI 215 Streptomyces b...
WP_013234872  147 APRASAVREFGFEADRDLVSAVEGVPELLyrgVF------GT--------KV-------RGGMSIKF--EIDTTAILATL 203 Herbaspirillum...
WP_012170673  144 SPFQRGLTTFGTDDALDLVRRISGRTRND---AV------ID--------SI-------SGARSLRLTGEFGLGDLPALA 199 Azorhizobium c...
WP_009944174  145 IPGGGDVGSFGMEPYGEFVSRFKGPADLN---DLtygtetGRd------pQI-------EVGDNLKAPLPRFGTALLSDL 208 Saccharopolysp...
WP_011453499  146 SAFQRDLQAFGVDEALDLVRRISGRVEDD---DF------AS--------SI-------SGATGLKITREMNLFDLPQIA 201 Jannaschia sp....
WP_011607373  150 VAGGQEVGGFGVETFAEIVNRIAGRTSSL---NI------SYareravsfSL-------EGADGLRLYLPTDPLALIDDL 213 Frankia alni
EGB89079      192 EQLLDLYSSDEYLQs-FPNIQKIVPE-K-DPLK-IERLDDSLLDAF--IN-KGPDLSLSIP--EIV--D--YSDNIYCTF 258 Escherichia co...
ZP_07373680   201 ERALDLYAAIDYQStaFADYDHLKPV-V-DPIQ-IRELKQQTADLL--CT-ADSGFELGFP--AFL--S---GEASYTKL 267 Ahrensia sp. R...
ZP_04965842   204 DLISQRYDSNEHRSr-WPQANNLVRV-R-DDEK-IIRLDGELEKILakVN-PEPSISLAAP--IER--SgeGPYAHHFVI 274 Burkholderia p...
ZP_07277988   210 DAVGAVVDEPDADSa-LRFIAQTRPMdR-HHPL-VPELERQLAEAL---G-GSDALGLAWP--SSA--AndAENAGSFRI 278 Streptomyces s...
BGI:SBI_03801 216 RAIARVLRDQAPAPe-LEFVEHIVPV-K-GADL-VTRLEERLDDMLg-EV-PDGRIAVAVP--SDH--WddYGAAQAFAT 285 Streptomyces b...
WP_013234872  204 DQIIERFDSNDHRVr-WPQANNLVHV-R-DETT-LSHLETLLDGILggRD-PQREISLAAP--GERsgD--KPYPQHFVI 274 Herbaspirillum...
WP_012170673  200 ADALEYYASNAYQQtdFAILDFVMPV-S-DRRL-AETLDELAAESIr-S--GEELFEFGLP--IGF--E---DQAVSYRF 266 Azorhizobium c...
WP_009944174  209 NAITKIVDEPDDDSs-LRFAHLVRRV-KsRDPE-RSRLEGRLAEALa-NGaEYHPLGIAWPanDLR--A--AEEAWSFKV 280 Saccharopolysp...
WP_011453499  202 EEALSRSKSKDYRNtgFYIIDKVRPI-L-DRVV-LATLDQKAVDVI--KT-GDDNFELSMP--GWS--D---DDVVYYGL 268 Jannaschia sp....
WP_011607373  214 RGLLDVLRQP-PAEg-LEFIEKVERL-R-RKDRrIPGLDRRLAEALd-AP-GQRAVGLSVP--GPYldE--QEEIQSYEL 283 Frankia alni
EGB89079      259 K--GRKGv--SPIYTDISLHEFYDYLGEID-LnTFNIDKIKSFSLNL----CNEEGVITKAYNIYRSFIYDIHf--dNED 327 Escherichia co...
ZP_07373680   268 Q--GRGM---KGEKPDISVAVYREALGPAA-A-VIHPEHLDQDYVLV----FSDDHRMLGRKSIYRCLVGGLQ----DKH 332 Ahrensia sp. R...
ZP_04965842   275 G--RMSAk--AATFPYLMFASWQGYLSSKG-L-GLTVETAKNTAVHL----LDKDKREFDRCSMYRCMGVEVD----LDK 340 Burkholderia p...
ZP_07277988   279 T--GLGPggpIHVPGRLELDHLTTRLSGIP-V-ERRLKALRAGRITTca-dEAGAEPTGAPLPAARWLVFETT----VEH 349 Streptomyces s...
BGI:SBI_03801 286 K--VHSPe--ARLTDDFSLEYVLNRARVQR-A-GTRFTALRDGTVTLyahtRAEKGDVIWASSVLRWIEAQVT----LGA 355 Streptomyces b...
WP_013234872  275 G--RMNAn--AATSPYLMFASWQGHARSKG-Q-PPNLETAKSTAVHL----LDENKEEIGVCTIYSCMGAEIT----HNG 340 Herbaspirillum...
WP_012170673  267 R--GPGC---RGTHPDLMLRDYVAAMSASL-P-DLTAETLHNHKIVAi---FNDDGRPDRKWSVKSSLVGSLV----HEN 332 Azorhizobium c...
WP_009944174  281 KslGGSGp--LVLEPSMELDVLSEQFRGMP-A-DVRLHRLRTARVVPca-dDAGTEEIGTSTSLRRWIVFETT----IDH 351 Saccharopolysp...
WP_011453499  269 Y--GPRl---RGRFPDLLMSNYRAALGSTElA-KLDVNKIQKHGVLAe---FNNDGGAKKRWSLKKALVGSIV----DSG 335 Jannaschia sp....
WP_011607373  284 K--LGRNr--RV-SEEVELEQILGLVAKIN-P-EGRRAALRRGRIVGct-dRDGMEPCGQPTAAELWVTAELPgetpEDP 355 Frankia alni
EGB89079      328 I-VYHLCDGEWYKV-DQDYLQSLKDYIDARCEdT------LLP--PY----N-------H-D-------NikdnirnysE 378 Escherichia co...
ZP_07373680   333 GvQHVISEGQWYVP-SDAIRVAAQDYFDRHVReEd----kSLP--SW----NartviktS-K-------KgkkthalsyE 393 Ahrensia sp. R...
ZP_04965842   341 T-THVLSSGGWYSA-GHQFIHETHVTLSELAApAf-----tLA--AW----Ns------I-D-------Y---------E 384 Burkholderia p...
ZP_07277988   350 T-RYVFHQSRWYRI-GETYVAQMRDQVRDVLArKq-----IWPdvTW----Kps---gqP-D-------D---------E 398 Streptomyces s...
BGI:SBI_03801 356 R-RFFLLDGQWHEI-GEAYLEAIRSQVERLITdTps---vDLP--AW----Vl------G-D-------K---------E 401 Streptomyces b...
WP_013234872  341 I-TYVLSSGSWYVA-DQNFIVGTNRVLGQIDPpm-----fALQ--AW----N-------SlD-------H---------E 384 Herbaspirillum...
WP_012170673  333 E-RYAINEGEWYRI-EQHFKDDIERFFDEAIEsWtcppepFRK--IYssdgN-------G-H-------Y---------E 384 Azorhizobium c...
WP_009944174  352 V-RYCYFQGEWFRI-GEEYVERIRDQVEQLLTrKnt--tlTFP--VW----Nrr---agH-A-------D---------E 401 Saccharopolysp...
WP_011453499  336 G-LYAISEGEWYRL-DEQFKADVDAGFATLKEgWsnppevIKK--MV----SddgkktgF-E-------S---------E 390 Jannaschia sp....
WP_011607373  356 H-RYVFQQGHWYEVhGQEYLDFLRREVENILDaRlp---wSLP--PW----P-------M-DrktgrriH---------E 408 Frankia alni
EGB89079      379 EN--YNEDVANISRNHICLDQKDISPDG-H--TQIEPCDIISyHDNKciFHHIK-I-SSR-SSQLSHLFNQGVNSIELLI 450 Escherichia co...
ZP_07373680   394 AEevYNTRAAASSG-YLLLDQKWFGGAD-RafSKLEACDLFDpEGLR--FIHVKrT-GRS-PSSTAYLFEQGRRSAELLA 467 Ahrensia sp. R...
ZP_04965842   385 GE--YNIAACAVDSDLWLFDKELVSFGG-Ga-SSFEFCDIMHlPTRT--LYFVK-H-PTG-SAGVSHLCEQVRRTVEMFF 455 Burkholderia p...
ZP_07277988   399 HR--YCQQVAALAPGYLCLDKDFASTPL-H--PRFELCDLLG-PEDE--LIHVK-W-LGR-ATAASHLYTQALVSAEALH 467 Streptomyces s...
BGI:SBI_03801 402 RD--YNESVPDLRPGYVCFDRDNVRTAL-HrgNGVEICDLLS-PDDV--LVMVK-R-AKG-SDALSHLFGQAVVAVQTLL 472 Streptomyces b...
WP_013234872  385 GP--YNEAAAAADVDLWLFDKELVSYGG-Gr-SRFEFCDIMHlPSKT--LYFVK-H-PAG-SAGVSHLCEQVRRTAETFF 455 Herbaspirillum...
WP_012170673  385 AEsaYNQRFALTHG-CVLLDRALIKIPG-VdrSDFETCDILDvENKS--FLHVK-KsSRR-SSVLSHFFKQGANSARHFS 458 Azorhizobium c...
WP_009944174  402 HS--YCHQVAERDG-YLCFDRNFAHTPF-Hp--KFELCDVVG-PNDE--LVHIK-W-LGA-ATAASHLYTQAAVSAEALR 469 Saccharopolysp...
WP_011453499  391 FS--YNERCANKYG-QVLLDQRILTVPAiPy-GKFEAADLLDiEGKR--LIHVK-K-SSRqSSVLSHFFKQGSNSARILK 462 Jannaschia sp....
WP_011607373  409 GC--YNRKVAEADERFVLLDKNLIRSPT-Hp-TGFETCDLLG-PDGE--LIHVK-K-ADS-SAPLSHLFSQGLISADTLC 478 Frankia alni
EGB89079      451 L-ESRSKEKLKELIEEN-IQDkdld--sfnRVIDNGNYKVEFGIITKKpaRLKSENLPL-FSKISLMRSLRTL-ALYRTE 524 Escherichia co...
ZP_07373680   468 --DDRVRGDFADILEKEgHPKtaa----kiRAMAREDFIVEFVIADMPn-DDGRMTVPF-LAKLAFAESTKFI-ESLGFK 538 Ahrensia sp. R...
ZP_04965842   456 ApDPSYRKKLIERVKAA-GKGwsvd--wmdSQPKRHEWNLCLVLMGKQ-----INQLPF-FAKCGIARLLREL-EKGGFN 525 Burkholderia p...
ZP_07277988   468 D-EPEALAQLADKVSTLdPG----------RTLGGAPDTVVLAAAGRA----WEVDELFtLSQVALLRLDRAV-RSLRAT 531 Streptomyces s...
BGI:SBI_03801 473 H-SPEAGDGFARKVAAArPGRp--------LPEGFRPSRVVFAILLKDg-AALTADTLFpFSQVTLVQTAKIL-EAWRVE 541 Streptomyces b...
WP_013234872  456 DtDPAYRQILESRIGAL-GKGwnts--wlrERPKRHEWNLCLVLMGKQ-----LNELPF-FAKCGISRLVGEL-QKRGFN 525 Herbaspirillum...
WP_012170673  459 T-FEAAWTQLRTMVVER-AGEqeal-hldrVRCDSRPWRVEFIIADTPr-RDGRFNIPF-FSKVSLRDEMRTM-RAMKYE 532 Azorhizobium c...
WP_009944174  470 D-EPDAARQLNEKIQEL-SPG----------RPEAQPSKVVLAIAGRS----WDPQQLFtLSQVSLLRLDRTL-RSYNTT 532 Saccharopolysp...
WP_011453499  463 T-IPEAREALVSKVRDL-TDDvtadslqtaMGEAMSGWKIEFHIVDAPr-KDGTFMIPF-FSRITLRDESRTL-KGMTYG 537 Jannaschia sp....
WP_011607373  479 I-DRVAVDQLKAKISAV-SPNh--------aHLVERPRAVVYAIHLAg--GMLTPESLFtFATIALVRAYRHIySRLGIP 546 Frankia alni
EGB89079      525 GAVSFI 530 Escherichia coli MS 117-3
ZP_07373680   539 SQLRFI 544 Ahrensia sp. R2A130
ZP_04965842   526 VFFQAV 531 Burkholderia pseudomallei 406e
ZP_07277988   532 LKVADI 537 Streptomyces sp. AA4
BGI:SBI_03801 542 VEVIGI 547 Streptomyces bingchenggensis BCW-1
WP_013234872  526 LSFLAV 531 Herbaspirillum seropedicae
WP_012170673  533 TGLKFI 538 Azorhizobium caulinodans
WP_009944174  533 LEFANI 538 Saccharopolyspora erythraea
WP_011453499  538 VSLRFI 543 Jannaschia sp. CCS1
WP_011607373  547 TYAIGI 552 Frankia alni
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap