Conserved Protein Domain Family
Chlam_Ver_rRNA
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TIGR04137: Chlam_Ver_rRNA 
Chlam_Verruc_Plancto small basic protein
Members of this protein family are commonly found next to markers of rRNA processing such as YbeY. They are extremely lineage-restricted, in the Planctomycetes and Chlamydiae/Verrucomicrobia group. Since classification is based on rRNA molecular phylogeny, this provides additional support for a role in rRNA metabolism. This small protein, about 50 amino acids in length, is rich in basic residues, a third line of support for rRNA interaction.
Links
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Statistics
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PSSM-Id: 275006
Aligned: 22 rows
Threshold Bit Score: 63.09
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Download Cn3D
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
ZP_05057934   1 MSQHPSYKSNASTGAKRNVLKRFERVELLKKRGEWK--DG--DRVSGLRKTKPE 50  Verrucomicrobiae bacterium DG1235
CBY16774      1 MSRHRSYGKSIKGETKRNVLKRFERIDLLRKLGRWN--DAtaKKATGLPKTPVI 52  Chlamydia psittaci RD1
ZP_01856939  15 VSLDKSLKSKSTLVRARNVLKRAERIEKLKFEDRWV--EG--QGALGLPKVRVE 64  Planctomyces maris DSM 8797
CAJ71823      1 MSIDKSLKPKGKLSRPRNVYRKVERIAILKAENRWD--QD--TSVFGLPKVKVE 50  Candidatus Kuenenia stuttgartiensis
ZP_02733930   1 MSIDKSLKRKAGMSRQRCVLTRAERITKMLENGKFG--AE--SSPYGLPKTRVQ 50  Gemmata obscuriglobus UQM 2246
ZP_01088636   1 MTIDKSLKVKRGGISSRSVLTRVERLEQMRKAGKFN--PEt-DSPIGIPKTRVI 51  Blastopirellula marina DSM 3645
WP_013566172  1 MSIDKSLRKGGGLGGQRNVLKRAERMALLQEDGRWT--EN--HGPYNLPKTKYR 50  Isosphaera pallida
WP_013630660  1 MSLNSSLKTGSKMKRPRNVLKRHERIEQLQKQDRWI--EG--QAPIGLPKVRVF 50  Planctomyces brasiliensis
WP_012910586  1 MPIDNSLKVKAGAISNRNVLTRAERLEKLKEADRWK--EG--DKVLGMPKVRvv 50  Pirellula staleyi
WP_011175603  1 MSRHPSFGKAGKTATKRNVLKRFERIDVLKKIGRWKdsEN--KRITGLPKTPVl 52  Candidatus Protochlamydia amoebophila
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