Conserved Protein Domain Family
DNA_lig_bact

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TIGR04120: DNA_lig_bact 
DNA ligase, ATP-dependent, PP_1105 family
This model describes a family of ATP-dependent DNA ligases present in about 12 % of prokaryotic genomes. It occurs as part of a four-gene system with an exonuclease, a helicase and a phosphoesterase, with all four genes clustered or at least the first two and last two paired. This family resembles DNA ligase I (see TIGR00574 and pfam01068), and its presumed function may be in DNA repair, replication, or recombination.
Statistics
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PSSM-Id: 274993
Aligned: 17 rows
Threshold Bit Score: 762.63
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ZP_01002760    2 KAFATLFSALDESTKTSAKVAALADYFRTAPDSDKLWTIALFTGRRPKRVITASKLRLWAAEVagLPDWLFEESYSIVGD 81  Loktanella vest...
ZP_01012523    2 KAYAALLERLAFTPGRNAKLALLQNYLTTAPDPDRGYALASLTGELDFAGAKPALLRALVSER--VDSELFTMSYHYVGD 79  Maritimibacter ...
ZP_04682689    2 RAFAELLDRLVLTPQRNGKLRLLIDHFRTTPDPDRGVALAAITRDLELQSVKPAMLRALIAER--TDPTLFAYSYDYVGD 79  Ochrobactrum in...
ZP_01863608    2 EEFAALIDALVYTRSRNEKLRLIAEYLRATPDPDRGWALAALSDGLDFPAVKSSTIRNLLKDR--IDPVLWTLSRDFVGD 79  Erythrobacter s...
ZP_04771423    2 KAFSRLLESLYYEPSTLGKTRLLLDYLRTTPDPDRGYAVAIIAGELSLPNFRRSMVMELIRAR--VDPTLLALSHDYVGE 79  Asticcacaulis e...
WP_010921437   4 RAFAHLLDRLSLTSSRNAKLILIQDHLRQTPDPDRGYALAALTGALSFNAAKPAFIRKAIEAR--MDPQLFAWSYDFVGD 81  Caulobacter vib...
WP_011651013   2 KAFADLLDRLVLTPSRNGKLKLLTDYFRDTPDPDRGYGLAAIAGTLEVRNVKPAMLRELVLER--MDEVLFRYSYDYVGD 79  Rhizobium legum...
WP_013040046   2 RAFSQLLDGLVYTRSRNGKLDLIAAYMRSAPDPDRGWALAALTGNLDLKAVKSSTIAEMTRAR--VDPVLFEMSRDYVGD 79  Sphingobium jap...
WP_011746759   2 KAFAALLERLAFTPARNAKLQLLQHYLERTPDPDRGWALAALTGDLELRRVTPSLLRGLAAER--VDGELLALSYDFVGD 79  Paracoccus deni...
WP_012427159   2 KRFAALYTALDATTSTHDKLEALTSYFAVAEPEDAAWASYFLAGGKPRQSVPTRLLTEIARERagLPAWLFEESYHAVGD 81  Burkholderia ph...
ZP_01002760   82 LAETIALVLPAPRATSDas--ltDWI-MHLRALGMQDDDARKAGIIAAWDRLPPAERFLFTKLLTGGLRIGVSAKLMTRA 158 Loktanella vest...
ZP_01012523   80 LAETIALIWPGQGEARD------VPLsEVVERLNAASKTETPAMIADWLDALDPSERLALLKLMTGGMRVGVSARLALTA 153 Maritimibacter ...
ZP_04682689   80 LAETISLIWPGPSETAPga---dLPLgIVVHELQNASRREGPMLVAGWLDVLGISERYALLKLVTGGLRVGVSARLAKQA 156 Ochrobactrum in...
ZP_01863608   80 TAETASLLWPAPDAPPSp-----PTMsETVALLGEMSRKTVLTELPKLLDRLDSSGRYALLKLATGGMRIGVSSRLAKTA 154 Erythrobacter s...
ZP_04771423   80 LSETVAHLWPAAEAEPGd----lPPLhAVVGAFRDTPKAQLPDYVVGLLDQMTSPERWALLKIGAGALRIGVSGRLLKQV 155 Asticcacaulis e...
WP_010921437  82 LAETVSLVWPAPSSRKWlganrpPELsEVIDALHSASRPEVQRLIEGWLDALDPDGRWALLKLMTGGLRVGVSSRLAKQA 161 Caulobacter vib...
WP_011651013  80 LAETISLVWDNERDIDRsal-aqPRLgEVVTGMNALGRTEVRSYVRDLLDRLDSSGRFAFIKLATGAMRIGVSARLAKQA 158 Rhizobium legum...
WP_013040046  80 LAETVALLWPKAEDQPPevddgsLTLsAIIDRLHATSRAAAPATLARMMDHLDASGRFALLKLATGGLRVGISARLAKTG 159 Sphingobium jap...
WP_011746759  80 LAETIALLWPEGAEDD-------PSLsQAVALLQGTGKAALPGAIAGMLDRLGPSERLAFLKLATGNLRIGVSARMARTA 152 Paracoccus deni...
WP_012427159  82 LAETIAHILPPAQRSSElg--ltQWIeQRVLTLRGVSPEELRTRLLSYWDELDWGGRFLLTKLIGGGFRVGVARQLVVRA 159 Burkholderia ph...
ZP_01002760  159 LAQATGQPEPELTHKLMGNW----TPdsvtWASLIE----------ADDPGTDA-SRPYPFYLAYGLED---LATLgPPA 220 Loktanella vest...
ZP_01012523  154 LAGTGDVPLDDIMELWAGFK----PP----YEPLFAwi------agGPKPEPTIkAPFRPVMLSTPNDYe-gLSAL-DPA 217 Maritimibacter ...
ZP_04682689  157 LADFGGVDVVEIEELWHGQS----PP----YEALFAwle-----grGEKPAATAaAPFRPVMLATALDEa-eIPSL-DAS 221 Ochrobactrum in...
ZP_01863608  155 FAQAFDVSVDEVEEYWHGLT----PP----YADLFAwaa-----egADPPDIENlPTFRPFMLAHPLEEt----VV-DLQ 216 Erythrobacter s...
ZP_04771423  156 LAKFGDQPVERIESLWHGID----AP----YQPLFDwle-----gqGPEPVVSGrLTFTPVMLAHPLEAk-dHALI-TPE 220 Asticcacaulis e...
WP_010921437 162 CANLGGVDIGEIEEIWHALA----PP----YGDLFAwle-----grSERPSPDApGRFRPVMLAQPLDEevdFQKL-DPA 227 Caulobacter vib...
WP_011651013 159 LADLGDKDVTEIETLWHGLQ----PP----YETLFEwla-----dgGEKPVLATpAIFHSVMLANAVEEg-dLTGL-DPV 223 Rhizobium legum...
WP_013040046 160 FAQAFNLDVDDVEECWHALA----PP----YAALFQwae-----gkADRPDPAGtPFFRPFMLAHPLEAe----SV-DLT 221 Sphingobium jap...
WP_011746759 153 LAGMGVPSVPEIEEIWHGLA----PP----YAPLFGwl------ggGARPESAAlAPFRPVMLSTPTDLd-eLRAL-DPG 216 Paracoccus deni...
WP_012427159 160 LAEVAGVDHKRIAQRMVGWTdsqqKPdaarYLRLIApeatgdetqaGDHPHESDlGLPYPFFLAHPLQAd-pATLG-DPS 237 Burkholderia ph...
ZP_01002760  221 DWSAERKWDGIRGQFILRGGTHYLWSRGEDLMTDRFPELA---QlcdALPDGTVIDGEVLA---FADDA----P-LP--F 287 Loktanella vest...
ZP_01012523  218 DFAAEWKWDGIRVQAAAHGYERRLYSRTGEDISAAFPDIV---D---RMEFSGALDGELIV---RRADE----V-AP--F 281 Maritimibacter ...
ZP_04682689  222 AFTAEWKWDGIRVQAVAENGLRRLYSRTGDDISGAFPDIL---E---AMDFEGAIDGELLV---GHHGEtgieT-AT--F 289 Ochrobactrum in...
ZP_01863608  217 DYAAEWKWDGIRVQLVRAGGETRLFSRSGDDISTTFPEFL---D---ILPINAVLDGELLVrgtHQGGEeg-gA-AS--F 286 Erythrobacter s...
ZP_04771423  221 TYAAEWKYDGIRVQVVDSALGRALFTRTGDDISGSFPDAL---A---HLNFHAVLDGELLV---QRGEE----M-GT--F 284 Asticcacaulis e...
WP_010921437 228 DYLAEWKWDGIRVQAVSERGERRLYTRTGDDISASFPDVV---E---ALDFEGAIDGELLV---LRDGA----L-AS--F 291 Caulobacter vib...
WP_011651013 224 NYAAEWKWDGIRVQLSRSGDRRKIYSRSGDDISGAFPDIL---D---AISFSGVVDGELLVggtARSNS----PtRT--F 291 Rhizobium legum...
WP_013040046 222 DYAAEWKWDGIRVQIVGTPGETRLYSRAGDDITGSFPDIA---Q---ALRHHAVLDGELLVkgeFQGGE----A-AS--F 288 Sphingobium jap...
WP_011746759 217 DYLAEWKWDGIRVQAVSEGGMRRLYSRTGEDISHAFPDVI---E---AMDFDGTADGELIV---RREGE----V-AP--F 280 Paracoccus deni...
WP_012427159 238 QWQIEWKWDGIRAQLVKRGGRVWLWSRGEDLITDRFPEVAalgE---ALPDGFVVDGEILA---WERGD----M-APlpF 306 Burkholderia ph...
ZP_01002760  288 AALQKRIGRKTVPRKLLTEAPVILMAYDLLEHD----GRDIRALPFADRRAALARLVARVSt---NAPLRLSPQVTFGTW 360 Loktanella vest...
ZP_01012523  282 GDLQKRLNRKTASKALLSSHPAALRLYDILIWD----DEDMRELPFHERRARLEAAVTTLD----PLRFDASPLLDFDTW 353 Maritimibacter ...
ZP_04682689  290 SDLQQRLNRKTVSAKQLRDYPAFVRAYDLLQEGnqqtGADLRALPFLERRARLQSFVSRLD----PRRFDLSPVLPFSDF 365 Ochrobactrum in...
ZP_01863608  287 NALQQRLGRKTVSKKMLTEYPAFIRLYDALLIE----GDDVRTLPWTERRGRLEALASRLP----GSHFDLSSVVEAKDF 358 Erythrobacter s...
ZP_04771423  285 NDLQQRLGRKAPSAKYMADYPAAIVAYDVLFLQ----GEDMRAQPYEQRRALLQAALEHHR----PYGIRLSPQLPFGDF 356 Asticcacaulis e...
WP_010921437 292 GDLQQRLNRKTVDAKLLAAFPAGIRAYDLLMDG----ETDLRALPFETRRARLEAFVASLK----TSRIDLSPLQPFSTW 363 Caulobacter vib...
WP_011651013 292 SDLQQRLNRKTVTAKMLGDYPAFIRTYDLLFDG----DDDVRGRTYVDRRDRLTEIIDRAP----HDRFDLSPLVLFSSW 363 Rhizobium legum...
WP_013040046 289 NALQQRLGRKAVTAKMMEDYPAFVRLYDILLDA----DEDLRPLPWEQRRARLESIVPQLD----PHRFDLSALIEAPDF 360 Sphingobium jap...
WP_011746759 281 GDLQKRLNRKTVGKGLLASHPAGLRLYDLLLWD----GRDLRAEPLGARRTVLEAVDF-------GPRIDISPLLDFATW 349 Paracoccus deni...
WP_012427159 307 ARLQPRIARKTLTKKILADSPATLLAYDLLEAR----GQDLRMTPLVERRARLEALAVSIEgtlaQDLLRVSPLVDAVDW 382 Burkholderia ph...
ZP_01002760  361 DDLAAARSQSR---D-VGAEGLMLKRHDSPYLAGRKK--GDWWKWKVDPLTIDAVMIYAQSGSGRRANLFTDYTFAVRDG 434 Loktanella vest...
ZP_01012523  354 DALAAHRADPP---A-AVIEGVMLKRLDSAYVAGRPR--GPWFKWKRDPMIVDAVLLYAQRGHGKRSGFYSDFTFGVWDD 427 Maritimibacter ...
ZP_04682689  366 EELARFRANPP---H-PVVEGVMLKRHDSAYLPGRPK--GPWFKWKRDPFTVDAVIVYAQRGHGKRSSYYSDFTFAVWTG 439 Ochrobactrum in...
ZP_01863608  359 DHLAQIREGSR---V-DAIEGLMLKRKDSPYIAGRRV--GYWYKWKRDPLLVDCVLMYAQRGSGKRSSFFSDYTFGCWDG 432 Erythrobacter s...
ZP_04771423  357 AELEALRASVE---NaSVIEGLMLKHRDSAYVAGRPT--GPWYKWKITPKLVDAVLMYAQRGSGKRSSFYSDFTFGLWSG 431 Asticcacaulis e...
WP_010921437 364 KALAALRLEPPegdA-RLSEGLMLKRRDSVYEPGRPK--GPWFKWKRDPRLIDAVLMYAQRGHGKRSSFYSDYTFGVWRE 440 Caulobacter vib...
WP_011651013 364 EELDTLRAAPP---D-PVIEGVMIKRRDSVYQAGRMK--GPWFKWKRNPYNVDAVLMYAQRGHGKRSSYYSDFTFGVWAD 437 Rhizobium legum...
WP_013040046 361 DALADIRAGAR---D-AAIEGVMLKRRDSPYVAGRKA--ALWYKWKRDPLTADCVMMYAQRGHGKRSSFYSDYTFGCWTE 434 Sphingobium jap...
WP_011746759 350 EDLAALRAEPP---A-AVIEGVMIKRRDSAYVAGRPR--GPWFKWKRDPMVVDAVLIYAQRGHGKRSGFHSDFTFGLWDG 423 Paracoccus deni...
WP_012427159 383 QALAALRDESR---A-RGVEGLMVKQRESMYGVGRTKasGTWWKWKIDPYAIDAVLLYAQRGHGRRASLYTDFTFAVWDE 458 Burkholderia ph...
ZP_01002760  435 -----DAMVPFTKAYSGLTDAEFRQITAWVRKNTLQKFGPVRQVPAV----HVFEIAFEGINASPRHKSGVALRFPRMLR 505 Loktanella vest...
ZP_01012523  428 -----DRLVPVGKAYSGFTDEELKRLDKFVRQNTVERFGPVRSLSPE----LVVEVAFEGLNRSKRHKSGVAMRFPRISR 498 Maritimibacter ...
ZP_04682689  440 pe-dePVLVPVGKAYFGFTDEELKLLDKFVRENTTERFGPVRSVRAEpdhgLVVEVAFEGLNRSTRHKSGVAMRFPRFSR 518 Ochrobactrum in...
ZP_01863608  433 dpdkgADLLPVGKAYSGFTDDELKKIDRHVRSNTINRFGPVRETDKS----LVFEVAFDSVHESKRHKSGLAMRFPRIHR 508 Erythrobacter s...
ZP_04771423  432 -----NQLLPIGKAYFGFTDFELKELDKWVRHNTLNSFGPVREVKKE----LVFEVAFDAVNRSKRHKSGYALRFPRISR 502 Asticcacaulis e...
WP_010921437 441 dedgrRTLTPVGKAYFGFTDEELKQIDKFVRDHTIERFGPVRSVRADadvgLIFEVAFEGLQRSSRHKSGVAMRFPRINR 520 Caulobacter vib...
WP_011651013 438 de-dgEQLVPVGKAYFGFTDAELEVLDKFVRNNTTERFGPVRAVRADkdfgFVVEVAFEGINRSTRHKSGVAMRFPRIAR 516 Rhizobium legum...
WP_013040046 435 e----GELLPVGKAYSGFTDEELKWLDRFVRTNTINRFGPVREVEKS----LVLEVAFDSIHESRRHKSGLAMRFPRISR 506 Sphingobium jap...
WP_011746759 424 g-----ELVPVGKAYFGFTDAELRELDRFVRQNTVERYGPVRALAPK----LVVEVAFEGLNRSTRHRSGVAMRFPRISR 494 Paracoccus deni...
WP_012427159 459 an-gvRTLVPFAKAYSGLTDEEMRQVDAIVRKTTIEKFGPVRSVTPT----LVFEIGFEGIQASPRHKSGVAVRFPRMLR 533 Burkholderia ph...
ZP_01002760  506 WRQDKPVAEANTLDDLREML 525 Loktanella vestfoldensis SKA53
ZP_01012523  499 IRWDKPAKEADHLTTLEAML 518 Maritimibacter alkaliphilus HTCC2654
ZP_04682689  519 LRWDKPPREADRLETLEKLL 538 Ochrobactrum intermedium LMG 3301
ZP_01863608  509 IRWDKPPHEADRIEALRALI 528 Erythrobacter sp. SD-21
ZP_04771423  503 IRWDKPAQEADHLSILEPLA 522 Asticcacaulis excentricus CB 48
WP_010921437 521 IRWDKPAREADELATLEAML 540 Caulobacter vibrioides
WP_011651013 517 LRPDKPSYEADRLRTLIAMI 536 Rhizobium leguminosarum
WP_013040046 507 IRRDKPAHEADSIAGLRRFL 526 Sphingobium japonicum
WP_011746759 495 IRWDKPAAEADRLETLEAML 514 Paracoccus denitrificans
WP_012427159 534 WRTDKHIDDADTLAMLKGFI 553 Burkholderia phytofirmans
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